Hs03621453_cn

• Gene Symbol: TSC22D4
• Assay Reference Genome Location: Chr.7:100472587 on build GRCh38
• Cytoband: 7q22.1

Target Gene Details

• Entrez Gene ID: 81628
• Gene Name: TSC22 domain family member 4
• Gene Aliases: THG-1, THG1, TILZ2
• Location: Chr.7:100466519-100479279 on Build GRCh38
• Assay Gene Location: Within Intron 3

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
TSC22D4	NM_001303043.1			NP_001289972.1
	NM_030935.4			NP_112197.1
	NR_130118.1
	NR_130119.1
	AJ133115.1			CAB43491.1
	AK296580.1
	AK297702.1
	AK314824.1
	BC001486.2			AAH01486.1
	BC001966.1			AAH01966.1
	BC002972.1			AAH02972.1
	BC010406.2			AAH10406.1
	BX341171.2

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
esv2734888	Chr.7:99975623 - 101290285 on Build GRCh38	Deletion	STAG3 GPC2 POP7 UFSP1 ZNHIT1 MIR6840 GAL3ST4 AZGP1P1 SRRT COPS6 MOGAT3 PILRA EPO SERPINE1 CNPY4 PCOLCE NAT16 FIS1 MIR106B ZAN PCOLCE-AS1 SLC12A9 ACTL6B CLDN15 AZGP1 GIGYF1 ACHE MIR6875 PMS2P1 AP1S1 MBLAC1 STAG3L5P-PVRIG2P-PILRB SPDYE3 PVRIG NYAP1 MUC17 MIR4658 PLOD3 TSC22D4 C7orf61 C7orf43 SAP25 ZNF3 MIR93 TFR2 PVRIG2P AGFG2 LRCH4 LOC105375429 MCM7 LAMTOR4 AP4M1 ZCWPW1 MUC12 MIR4653 MEPCE VGF TRIP6 EPHB4 GATS ZKSCAN1 STAG3L5P MUC3A FBXO24 ZSCAN21 LOC102724094 TRIM56 ZASP PILRB TAF6 MOSPD3 PPP1R35 GNB2 MIR25
nsv527050	Chr.7:100458543 - 100528352 on Build GRCh38	Loss	TSC22D4 C7orf61 NYAP1
nsv831071	Chr.7:100320402 - 100515790 on Build GRCh38	Loss	NYAP1 ZCWPW1 MEPCE MIR6840 STAG3L5P TSC22D4 C7orf61 PILRA PMS2P1 PILRB STAG3L5P-PVRIG2P-PILRB PVRIG2P SPDYE3 PPP1R35
nsv951385	Chr.7:100467278 - 100496477 on Build GRCh38	Deletion	TSC22D4 NYAP1

More Information

Additional Information:

For this assay, SNP(s) [rs112356273] are located under a primer or probe sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.

• Set Membership: Intragenic, Intronic, Non-exonic, DGV Variation

Gene Ontology Categories:

Process(es)

transcription, DNA-templated
negative regulation of transcription, DNA-templated

Function(s)

transcription factor activity, sequence-specific DNA binding
protein binding