Hs03806791_cn

• Gene Symbol: HOXC4
• Assay Reference Genome Location: Chr.12:54044287 on build GRCh38
• Cytoband: 12q13.13

Target Gene Details

• Entrez Gene ID: 3221
• Gene Name: homeobox C4
• Gene Aliases: HOX3, HOX3E, cp19
• Location: Chr.12:54016852-54056030 on Build GRCh38
• Assay Gene Location: Within Intron 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
HOXC4	NM_014620.5			NP_055435.2
	BQ893403.1
	X07495.1			CAA30376.1

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
esv2759900	Chr.12:53953285 - 54140862 on Build GRCh38	Gain+Loss	HOXC11 HOXC-AS3 HOXC6 LOC100240734 MIR196A2 LOC107984512 HOXC12 HOTAIR HOXC9 LOC400043 HOXC8 MIR615 HOXC5 HOXC4 HOXC-AS2 HOXC-AS1 LOC100240735 FLJ12825 HOXC10
nsv826379	Chr.12:53935085 - 54056069 on Build GRCh38	Gain	HOXC11 HOXC13 HOXC-AS3 HOXC6 MIR196A2 LOC107984512 HOXC12 HOTAIR HOXC9 HOXC8 MIR615 HOXC5 HOXC4 HOXC-AS2 HOXC-AS1 HOXC13-AS HOXC10
nsv716	Chr.12:54041145 - 54073222 on Build GRCh38	Insertion	FLJ12825 HOXC4
nsv832418	Chr.12:54016556 - 54186660 on Build GRCh38	Loss	SMUG1 HOXC6 LOC100240734 LOC100240735 LOC400043 FLJ12825 MIR615 HOXC5 HOXC4

More Information

Additional Information:

For this assay, SNP(s) [rs116396543] are located under a primer or probe sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.

• Set Membership: Intragenic, Intronic, Non-exonic, DGV Variation

Gene Ontology Categories:

Process(es)

transcription, DNA-templated
regulation of transcription, DNA-templated
anterior/posterior pattern specification
embryonic organ morphogenesis
cartilage development

Function(s)

transcription factor activity, sequence-specific DNA binding
protein binding
sequence-specific DNA binding
HMG box domain binding