Hs03918147_cn

• Gene Symbol: HS3ST6
• Assay Reference Genome Location: Chr.16:1916991 on build GRCh38
• Cytoband: 16p13.3

Target Gene Details

• Entrez Gene ID: 64711
• Gene Name: heparan sulfate-glucosamine 3-sulfotransferase 6
• Gene Aliases: 3-OST-6, HS3ST5
• Location: Chr.16:1911463-1921428 on Build GRCh38
• Assay Gene Location: Within Intron 2

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
HS3ST6	NM_001009606.3			NP_001009606.3
	XM_011522608.2			XP_011520910.1
	DY654407.1

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
esv2422427	Chr.16:10001 - 2723164 on Build GRCh38	Duplication	LOC106660606 HBQ1 PRSS29P TBC1D24 MIR5587 MIR1225 AXIN1 TPSAB1 C16orf59 FBXL16 LUC7L HAGH PIGQ WDR24 MIR3178 SNORA10 LMF1 NPRL3 BRICD5 NTN3 MIR6767 MIR6511B1 RAB26 MPG FAM173A IFT140 RPS2 SNRNP25 NME4 TPSD1 HS3ST6 KCTD5 SLC9A3R2 LOC105371049 HBM GFER TPSG1 DNASE1L2 MLST8 MIR940 FLJ42627 NME3 MSLN LOC105371045 SNHG19 MIR662 ATP6V0C CASKIN1 NPW SYNGR3 RGS11 SNHG9 C1QTNF8 LINC00254 RAB40C PTX4 SSTR5 MIR3177 RNPS1 MEIOB HBA1 LOC105371047 TMEM204 TPSB2 LINC00235 LOC100287175 HN1L GNG13 SOX8 MIR6859-4 RHOT2 RHBDF1 ECI1 AMDHD2 LOC101929280 MIR4516 SNORA78 SSTR5-AS1 RNF151 CACNA1H LOC107987233 PRR25 ARHGDIG HBA2 CRAMP1 TRAF7 RAB11FIP3 DDX11L10 NTHL1 LOC105371046 CCDC154 MSRB1 MAPK8IP3 C16orf91 NUBP2 UBE2I LOC729652 LOC105371038 FAM234A LMF1-AS1 MIR3677 WASIR2 EME2 ERVK13-1 CCNF TELO2 E4F1 IGFALS DECR2 PRR35 METRN PDIA2 CHTF18 PDPK1 MRPS34 BAIAP3 RPL23AP5 MIR6768 GNPTG NHLRC4 TBL3 CAPN15 CCDC78 SNORD60 RHBDL1 ABCA3 JMJD8 LOC107984876 PKD1 UNKL RPUSD1 LOC100134368 POLR3K ABCA17P TSC2 PGP HBZ METTL26 WDR90 MCRIP2 LOC105371184 NOXO1 FAHD1 TSR3 CEMP1 WFIKKN1 STUB1 CLCN7 SNORA64 NARFL PRSS27 HAGHL MIR3180-5 SPSB3 MRPL28 RPL3L ZNF598 TMEM8A MIR4717 MIR3176 LOC652276 NDUFB10
nsv952901	Chr.16:1888800 - 2135899 on Build GRCh38	Deletion	NOXO1 PKD1 MIR1225 NTHL1 SNORA64 MIR6511B1 MSRB1 NPW SYNGR3 RPS2 TSC2 SNHG9 RPL3L MIR4516 ZNF598 SNORA78 RNF151 HS3ST6 SLC9A3R2 LOC105371049 GFER SNORA10 TBL3 NDUFB10
nsv833120	Chr.16:1893102 - 1980660 on Build GRCh38	Loss	MSRB1 NOXO1 RPS2 SNHG9 RPL3L SNORA78 RNF151 HS3ST6 SNORA64 SNORA10 TBL3 NDUFB10
nsv519366	Chr.16:1851210 - 1961125 on Build GRCh38	Loss	MSRB1 MEIOB RPL3L HS3ST6 LINC00254 NDUFB10

More Information

Additional Information:

For this assay, SNP(s) [rs138116416] are located under a primer or probe sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.

• Set Membership: Intragenic, Intronic, Non-exonic, DGV Variation

Panther Classification:

Molecular Function -

transferase

Gene Ontology Categories:

Process(es)

glycosaminoglycan biosynthetic process

Function(s)

[heparan sulfate]-glucosamine 3-sulfotransferase 1 activity