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See other FANCA CNV Assays ›
Gene Symbol
FANCA
Assay Reference Genome
Location

Chr.16:89751642 on build GRCh38
Cytoband
16q24.3
Assay ID Hs03919999_cn
Size
Availability Made To Order
Catalog # 4400291
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Assay Details

Target Gene Details

Entrez Gene ID:

 2175

Gene Name:

 Fanconi anemia complementation group A

Gene Aliases:

 FA, FA-H, FA1, FAA, FACA, FAH, FANCH

Location:

 Chr.16:89737551-89816658 on Build GRCh38

Assay Gene Location:

 Within Intron 33
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
FANCA NM_000135.2 NP_000126.2
NM_001286167.1 NP_001273096.1
XM_005256294.4 XP_005256351.1
XM_011522945.2 XP_011521247.1
XM_011522946.2 XP_011521248.1
XM_011522947.2 XP_011521249.1
XM_017023044.1 XP_016878533.1
AK299282.1
AK301168.1
X99226.1 CAA67610.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
nsv457624 Chr.16:89738447 - 89915950 on Build GRCh38 Loss LOC105371419 TCF25 LOC107984817 FANCA SPIRE2 ZNF276
esv2762221 Chr.16:89610380 - 90039318 on Build GRCh38 Gain+Loss LOC105371419 TCF25 SPATA33 LOC107984817 FANCA SPATA2L DPEP1 CHMP1A TUBB3 SPIRE2 MC1R CENPBD1 GAS8 VPS9D1 AFG3L1P DBNDD1 CDK10 VPS9D1-AS1 GAS8-AS1 DEF8 ZNF276
nsv457623 Chr.16:89664419 - 89853617 on Build GRCh38 Gain LOC105371419 VPS9D1 CDK10 SPATA33 VPS9D1-AS1 LOC107984817 FANCA SPATA2L SPIRE2 ZNF276
nsv428331 Chr.16:89216635 - 90185980 on Build GRCh38 Gain+Loss FANCA FAM157C CHMP1A TUBB3 ANKRD11 TUBB8P7 MC1R VPS9D1 AFG3L1P VPS9D1-AS1 ZNF276 LOC105371419 TCF25 LOC101927817 SPG7 SPATA33 LOC107984817 SPATA2L DPEP1 LOC105371414 CPNE7 PRDM7 SPIRE2 CENPBD1 GAS8 SNORD68 DBNDD1 CDK10 RPL13 ZNF778 LOC100287036 GAS8-AS1 DEF8 URAHP
nsv833331 Chr.16:89726091 - 89849806 on Build GRCh38 Gain+Loss LOC105371419 LOC107984817 FANCA SPIRE2 ZNF276
nsv482951 Chr.16:88633593 - 90228345 on Build GRCh38 Loss CDH15 FAM157C TUBB3 TUBB8P7 PIEZO1 MC1R RNF166 CYBA SNAI3-AS1 VPS9D1 AFG3L1P LINC00304 TCF25 SPG7 SPATA33 LOC100129697 SPATA2L LOC100289580 DPEP1 LOC105371414 SLC22A31 LOC107987238 CTU2 LOC101927793 TRAPPC2L SNORD68 DBNDD1 CDK10 RPL13 ZNF778 LOC100287036 URAHP MIR4722 FANCA APRT CHMP1A ANKRD11 GALNS LOC339059 IL17C VPS9D1-AS1 LOC105371409 PABPN1L MVD ACSF3 ZNF276 LOC105371419 LOC101927817 LOC107984817 CPNE7 CDT1 CBFA2T3 PRDM7 SPIRE2 LOC400558 CENPBD1 SNAI3 GAS8 GAS8-AS1 DEF8
nsv509639 Chr.16:89513538 - 89775915 on Build GRCh38 Insertion SPG7 SPATA33 FANCA SPATA2L DPEP1 CHMP1A CPNE7 VPS9D1 SNORD68 CDK10 VPS9D1-AS1 RPL13 ZNF276

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