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See other FANCA CNV Assays ›
Gene Symbol
FANCA
Assay Reference Genome
Location

Chr.16:89761526 on build GRCh38
Cytoband
16q24.3
Assay ID Hs03921368_cn
Size
Availability Made To Order
Catalog # 4400291
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Assay Details

Target Gene Details

Entrez Gene ID:

 2175

Gene Name:

 Fanconi anemia complementation group A

Gene Aliases:

 FA, FA-H, FA1, FAA, FACA, FAH, FANCH

Location:

 Chr.16:89737551-89816658 on Build GRCh38

Assay Gene Location:

 Within Intron 30
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
FANCA NM_000135.2 NP_000126.2
NM_001286167.1 NP_001273096.1
XM_005256294.4 XP_005256351.1
XM_011522945.2 XP_011521247.1
XM_011522946.2 XP_011521248.1
XM_011522947.2 XP_011521249.1
XM_017023044.1 XP_016878533.1
XM_017023045.1 XP_016878534.1
AK299282.1
AK301168.1
X99226.1 CAA67610.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
nsv457624 Chr.16:89738447 - 89915950 on Build GRCh38 Loss LOC107984817 ZNF276 FANCA TCF25 LOC105371419 SPIRE2
esv2762221 Chr.16:89610380 - 90039318 on Build GRCh38 Gain+Loss SPATA2L VPS9D1-AS1 DBNDD1 CHMP1A DEF8 DPEP1 ZNF276 VPS9D1 AFG3L1P SPIRE2 SPATA33 GAS8-AS1 LOC107984817 CDK10 CENPBD1 GAS8 FANCA TCF25 LOC105371419 MC1R TUBB3
nsv457623 Chr.16:89664419 - 89853617 on Build GRCh38 Gain SPATA2L VPS9D1-AS1 LOC107984817 CDK10 ZNF276 VPS9D1 FANCA LOC105371419 SPIRE2 SPATA33
nsv428331 Chr.16:89216635 - 90185980 on Build GRCh38 Gain+Loss SPATA2L VPS9D1-AS1 LOC100287036 CHMP1A DPEP1 PRDM7 SNORD68 VPS9D1 AFG3L1P URAHP TUBB8P7 LOC101927817 CPNE7 CENPBD1 GAS8 TCF25 LOC105371419 TUBB3 DBNDD1 DEF8 ZNF276 LOC105371414 SPIRE2 SPATA33 GAS8-AS1 LOC107984817 ZNF778 CDK10 RPL13 SPG7 FANCA FAM157C MC1R ANKRD11
nsv833331 Chr.16:89726091 - 89849806 on Build GRCh38 Gain+Loss LOC107984817 ZNF276 FANCA LOC105371419 SPIRE2
nsv482951 Chr.16:88633593 - 90228345 on Build GRCh38 Loss APRT SNAI3 LOC100287036 CBFA2T3 CTU2 LOC100129697 CHMP1A LOC105371409 PRDM7 SNORD68 URAHP TUBB8P7 LOC400558 LOC101927817 MVD LOC339059 SLC22A31 PIEZO1 TUBB3 LOC101927793 ZNF276 SPIRE2 SPATA33 LOC107984817 ZNF778 SNAI3-AS1 RPL13 GALNS FANCA FAM157C ANKRD11 MIR4722 SPATA2L VPS9D1-AS1 DPEP1 VPS9D1 AFG3L1P CYBA CPNE7 LINC00304 CENPBD1 GAS8 TCF25 LOC105371419 DBNDD1 IL17C DEF8 LOC107987238 CDH15 LOC100289580 LOC105371414 GAS8-AS1 CDT1 CDK10 TRAPPC2L SPG7 PABPN1L ACSF3 MC1R RNF166
nsv509639 Chr.16:89513538 - 89775915 on Build GRCh38 Insertion SPATA2L VPS9D1-AS1 CHMP1A DPEP1 ZNF276 SNORD68 VPS9D1 SPATA33 CPNE7 CDK10 RPL13 SPG7 FANCA

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