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Gene Symbol
TCF25
Assay Reference Genome
Location

Chr.16:89900188 on build GRCh38
Cytoband
16q24.3
Assay ID Hs03921378_cn
Size
Availability Made To Order
Catalog # 4400291
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Assay Details

Target Gene Details

Entrez Gene ID:

 22980

Gene Name:

 transcription factor 25

Gene Aliases:

 FKSG26, Hulp1, NULP1, PRO2620, hKIAA1049

Location:

 Chr.16:89873583-89911384 on Build GRCh38

Assay Gene Location:

 Within Intron 13
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
TCF25 NM_014972.2 NP_055787.1
XM_005256297.2 XP_005256354.1
XM_005256298.2 XP_005256355.1
XM_005256299.2 XP_005256356.1
XM_011522956.2 XP_011521258.1
XM_011522957.2 XP_011521259.1
XM_011522958.2 XP_011521260.1
XM_011522959.2 XP_011521261.1
XM_011522960.2 XP_011521262.1
XM_011522961.2 XP_011521263.1
XM_017023047.1 XP_016878536.1
XM_017023048.1 XP_016878537.1
XM_017023049.1 XP_016878538.1
XM_017023050.1 XP_016878539.1
XM_017023051.1 XP_016878540.1
XM_017023052.1 XP_016878541.1
XM_017023053.1 XP_016878542.1
XM_017023054.1 XP_016878543.1
XM_017023055.1 XP_016878544.1
XM_017023056.1 XP_016878545.1
XM_017023057.1 XP_016878546.1
XM_017023058.1 XP_016878547.1
AB028972.1 BAA83001.1
AF130092.1 AAG35518.1
AF322111.1 AAG50276.1
BC000959.1 AAH00959.1
BC009349.2 AAH09349.1
BC011884.2 AAH11884.1
DQ321703.1 ABC55265.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
nsv457624 Chr.16:89738447 - 89915950 on Build GRCh38 Loss TCF25 SPIRE2 ZNF276 FANCA LOC105371419 LOC107984817
esv2762221 Chr.16:89610380 - 90039318 on Build GRCh38 Gain+Loss GAS8 CDK10 DPEP1 CHMP1A DBNDD1 ZNF276 SPATA33 VPS9D1-AS1 FANCA VPS9D1 LOC105371419 SPATA2L GAS8-AS1 LOC107984817 AFG3L1P TCF25 MC1R SPIRE2 DEF8 CENPBD1 TUBB3
esv2758671 Chr.16:89804324 - 89901541 on Build GRCh38 Loss TCF25 SPIRE2 FANCA LOC105371419 LOC107984817
nsv573810 Chr.16:89857498 - 90037251 on Build GRCh38 Loss AFG3L1P GAS8 TCF25 MC1R SPIRE2 DEF8 CENPBD1 DBNDD1 TUBB3 GAS8-AS1
nsv428331 Chr.16:89216635 - 90185980 on Build GRCh38 Gain+Loss GAS8 LOC100287036 DPEP1 URAHP DBNDD1 ZNF276 SPATA33 VPS9D1-AS1 LOC105371419 SPATA2L LOC107984817 AFG3L1P TCF25 MC1R LOC105371414 PRDM7 SPIRE2 DEF8 CENPBD1 SPG7 TUBB3 CDK10 RPL13 ANKRD11 CHMP1A CPNE7 FAM157C FANCA VPS9D1 GAS8-AS1 ZNF778 LOC101927817 TUBB8P7 SNORD68
nsv573799 Chr.16:89852186 - 90022379 on Build GRCh38 Gain AFG3L1P GAS8 TCF25 MC1R SPIRE2 DEF8 CENPBD1 DBNDD1 TUBB3 LOC105371419
nsv509640 Chr.16:89899749 - 89969797 on Build GRCh38 Insertion TCF25 MC1R DEF8 CENPBD1 TUBB3
nsv482951 Chr.16:88633593 - 90228345 on Build GRCh38 Loss GAS8 URAHP DBNDD1 VPS9D1-AS1 GALNS MIR4722 CBFA2T3 TCF25 MC1R LOC105371414 PRDM7 SPIRE2 DEF8 LOC100289580 SPG7 CTU2 TUBB3 LOC105371409 ANKRD11 CHMP1A CPNE7 SLC22A31 FAM157C FANCA VPS9D1 LOC107987238 GAS8-AS1 CYBA LOC339059 ZNF778 RNF166 LOC100287036 DPEP1 LOC400558 SNAI3-AS1 ZNF276 LOC100129697 SPATA33 ACSF3 IL17C LOC105371419 PABPN1L SPATA2L MVD LOC107984817 AFG3L1P LINC00304 CENPBD1 CDK10 PIEZO1 RPL13 APRT CDT1 CDH15 SNAI3 LOC101927817 TRAPPC2L TUBB8P7 LOC101927793 SNORD68
nsv1066499 Chr.16:89891957 - 90028891 on Build GRCh38 Loss AFG3L1P GAS8 TCF25 MC1R DEF8 CENPBD1 DBNDD1 TUBB3

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More Information


Additional Information:

For this assay, SNP(s) [rs142778558] are located under a primer or probe sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.

Set Membership:

 Intragenic Intronic Non-exonic DGV Variation

Gene Ontology Categories:

Function(s) Process(es)


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