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See other TSC2 CNV Assays ›
Gene Symbol
TSC2
Assay Reference Genome
Location

Chr.16:2076667 on build GRCh38
Cytoband
16p13.3
Assay ID Hs03924990_cn
Size
Availability Made To Order
Catalog # 4400291
Price
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Assay Details

Target Gene Details

Entrez Gene ID:

 7249

Gene Name:

 tuberous sclerosis 2

Gene Aliases:

 LAM, PPP1R160, TSC4

Location:

 Chr.16:2047804-2088720 on Build GRCh38

Assay Gene Location:

 Within Intron 27
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
TSC2 NM_000548.4 NP_000539.2
NM_001077183.2 NP_001070651.1
NM_001114382.2 NP_001107854.1
NM_001318827.1 NP_001305756.1
NM_001318829.1 NP_001305758.1
NM_001318831.1 NP_001305760.1
NM_001318832.1 NP_001305761.1
XM_005255529.4 XP_005255586.2
XM_005255531.4 XP_005255588.2
XM_011522636.2 XP_011520938.1
XM_011522637.2 XP_011520939.1
XM_011522638.2 XP_011520940.2
XM_011522639.2 XP_011520941.1
XM_011522640.2 XP_011520942.1
XM_017023615.1 XP_016879104.1
XM_017023616.1 XP_016879105.1
XM_017023617.1 XP_016879106.1
XM_017023618.1 XP_016879107.1
AB210000.1
AK295672.1
AK295728.1
AK299343.1
BC150300.1
BX647816.1 CAI46010.1
KJ534954.1
KJ534955.1
KJ534956.1
KJ534957.1
KJ534958.1
KJ534982.1
KJ534983.1
KJ534984.1
KJ534985.1
KJ535011.1
KJ535022.1
KJ535038.1
KJ535039.1
KJ535051.1
KJ535091.1
KJ535094.1
X75621.1 CAA53287.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
esv2422427 Chr.16:10001 - 2723164 on Build GRCh38 Duplication FAHD1 NPRL3 LINC00235 LOC100134368 MIR3180-5 WDR24 TSC2 HN1L KCTD5 PIGQ HAGH PTX4 SNORA10 C16orf91 PRSS27 MIR1225 MPG MIR3178 MIR6768 MSLN HBM LINC00254 PRR25 CLCN7 HBA1 TMEM204 RHBDL1 MAPK8IP3 RPUSD1 NME3 ABCA17P SNHG9 LOC105371038 GNG13 NDUFB10 IFT140 LUC7L HS3ST6 DDX11L10 BAIAP3 FAM173A FAM234A LOC105371049 LOC729652 LOC105371047 POLR3K TPSB2 TBL3 AMDHD2 RHOT2 MIR6511B1 JMJD8 GNPTG C1QTNF8 SNHG19 EME2 MIR940 DNASE1L2 NHLRC4 SPSB3 TPSAB1 MRPL28 SSTR5-AS1 IGFALS FLJ42627 LOC107984876 ECI1 TMEM8A HBQ1 MLST8 NOXO1 PRR35 TPSG1 SOX8 RNPS1 METTL26 FBXL16 MIR4516 MIR3176 CEMP1 NUBP2 MRPS34 WDR90 RGS11 SNORD60 PDPK1 ABCA3 ATP6V0C CCNF TELO2 SYNGR3 LOC100287175 CACNA1H CRAMP1 UNKL AXIN1 MIR6859-4 RPL23AP5 CCDC78 LOC106660606 LMF1 RAB26 CAPN15 UBE2I CASKIN1 RNF151 MIR662 LOC105371046 SLC9A3R2 SNRNP25 TSR3 MEIOB SNORA78 E4F1 NME4 CHTF18 METRN ZNF598 TBC1D24 SSTR5 NPW LOC105371184 SNORA64 ARHGDIG LOC101929280 MIR6767 NTN3 LMF1-AS1 LOC107987233 RPS2 BRICD5 RHBDF1 RPL3L STUB1 TPSD1 RAB40C MIR5587 LOC105371045 PDIA2 C16orf59 MSRB1 WFIKKN1 MIR3177 HBA2 WASIR2 RAB11FIP3 CCDC154 PGP MIR4717 TRAF7 LOC652276 PKD1 PRSS29P MIR3677 NARFL NTHL1 MCRIP2 ERVK13-1 HAGHL GFER DECR2 HBZ
nsv523037 Chr.16:1971892 - 2083900 on Build GRCh38 Loss ZNF598 SLC9A3R2 SYNGR3 TBL3 TSC2 NTHL1 GFER NOXO1 NPW
nsv952901 Chr.16:1888800 - 2135899 on Build GRCh38 Deletion LOC105371049 ZNF598 MSRB1 TBL3 TSC2 NOXO1 MIR6511B1 RNF151 NPW SNHG9 SNORA64 PKD1 SLC9A3R2 SYNGR3 MIR4516 NDUFB10 SNORA10 HS3ST6 NTHL1 MIR1225 RPS2 GFER RPL3L SNORA78
nsv1160329 Chr.16:1961727 - 2128574 on Build GRCh38 Deletion LOC105371049 ZNF598 TBL3 TSC2 NOXO1 MIR6511B1 RNF151 NPW SNHG9 SNORA64 PKD1 SLC9A3R2 SYNGR3 NDUFB10 SNORA10 NTHL1 MIR1225 RPS2 GFER SNORA78
nsv457349 Chr.16:2055054 - 2200730 on Build GRCh38 Loss TRAF7 LOC105371049 PKD1 MIR3180-5 MIR4516 RAB26 SNHG19 TSC2 MIR1225 SNORD60 MIR6511B1 CASKIN1
nsv1052260 Chr.16:2074546 - 2629655 on Build GRCh38 Gain E4F1 LOC105371049 LOC729652 TBC1D24 MIR3180-5 AMDHD2 TSC2 SNORD60 MIR6511B1 PDPK1 ABCA3 ATP6V0C CCNF MIR6767 NTN3 SNHG19 MIR1225 BRICD5 MIR940 MIR3178 MIR6768 DNASE1L2 C16orf59 LOC106660606 ECI1 RAB26 MLST8 PGP CASKIN1 MIR4717 ABCA17P TRAF7 LOC652276 PKD1 RNPS1 MIR4516 CEMP1 MIR3677

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