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See other ABCC6 CNV Assays ›
Gene Symbol
ABCC6
Assay Reference Genome
Location

Chr.16:16151594 on build GRCh38
Cytoband
16p13.11
Assay ID Hs03925333_cn
Size
Availability Made To Order
Catalog # 4400291
Price
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Assay Details

Target Gene Details

Entrez Gene ID:

 368

Gene Name:

 ATP binding cassette subfamily C member 6

Gene Aliases:

 ABC34, ARA, EST349056, GACI2, MLP1, MOAT-E, MOATE, MRP6, PXE, PXE1, URG7

Location:

 Chr.16:16149565-16223616 on Build GRCh38

Assay Gene Location:

 Within Intron 30
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
ABCC6 NM_001171.5 NP_001162.4
XM_011522479.2 XP_011520781.1
XM_011522480.1 XP_011520782.1
XM_011522481.2 XP_011520783.1
XM_017023212.1 XP_016878701.1
XM_017023213.1 XP_016878702.1
AF076622.1 AAC79696.1
AF168791.1 AAD51293.1
AM711638.1
AM774324.1
BC131732.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
esv3638050 Chr.16:16008227 - 16214274 on Build GRCh38 Gain ABCC1 ABCC6
nsv435664 Chr.16:15247194 - 18197960 on Build GRCh38 Deletion MIR3179-2 PKD1P2 MIR6770-2 PKD1P1 LOC102723692 MIR6511A2 NPIPA7 XYLT1 MYH11 FOPNL NDE1 C16orf45 ABCC1 NPIPA5 ABCC6 MIR6506 KIAA0430 MIR484 NOMO3 MIR3670-2 MIR3180-2 MIR6511A3 MPV17L
nsv457437 Chr.16:16127001 - 16195675 on Build GRCh38 Gain ABCC1 ABCC6
nsv1045013 Chr.16:16149597 - 16170241 on Build GRCh38 Loss ABCC6
esv34006 Chr.16:15939082 - 16176993 on Build GRCh38 Loss ABCC1 ABCC6
esv2714015 Chr.16:15292092 - 18247911 on Build GRCh38 Deletion MIR3179-2 PKD1P2 MIR6770-2 PKD1P1 LOC102723692 MIR6511A2 NPIPA7 XYLT1 MYH11 FOPNL NDE1 C16orf45 ABCC1 NPIPA5 ABCC6 MIR6506 KIAA0430 MIR484 NOMO3 MIR3670-2 MIR3180-2 MIR6511A3 MPV17L
esv2758633 Chr.16:16091360 - 16829931 on Build GRCh38 Gain+Loss MIR3179-2 PKD1P2 ABCC1 MIR6770-2 PKD1P1 ABCC6 MIR6511A2 NOMO3 NPIPA7 MIR3670-2 MIR3180-2 MIR6511A3
esv3638052 Chr.16:16131123 - 16180113 on Build GRCh38 Gain ABCC1 ABCC6
nsv469785 Chr.16:16127738 - 16284512 on Build GRCh38 Gain+Loss ABCC1 ABCC6 NOMO3
nsv1047898 Chr.16:15388065 - 18284986 on Build GRCh38 Loss MIR3179-2 PKD1P2 MIR6770-2 PKD1P1 LOC102723692 MIR6511A2 NPIPA7 XYLT1 MYH11 FOPNL NDE1 C16orf45 ABCC1 ABCC6 MIR6506 KIAA0430 MIR484 NOMO3 MIR3670-2 MIR3180-2 MIR6511A3 MPV17L
nsv1053451 Chr.16:15966537 - 16196638 on Build GRCh38 Gain ABCC1 ABCC6
nsv457428 Chr.16:15386022 - 18071186 on Build GRCh38 Gain MIR3179-2 PKD1P2 MIR6770-2 PKD1P1 LOC102723692 MIR6511A2 NPIPA7 XYLT1 MYH11 FOPNL NDE1 C16orf45 ABCC1 ABCC6 MIR6506 KIAA0430 MIR484 NOMO3 MIR3670-2 MIR3180-2 MIR6511A3 MPV17L
nsv1125134 Chr.16:15180201 - 18091718 on Build GRCh38 Deletion MIR3179-2 PKD1P2 MIR6770-2 PKD1P1 LOC102723692 MIR6511A2 NPIPA7 XYLT1 MYH11 FOPNL NDE1 C16orf45 ABCC1 NPIPA5 ABCC6 MIR6506 KIAA0430 MIR484 NOMO3 MIR3670-2 MIR3180-2 MIR6511A3 MPV17L

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More Information


Additional Information:

For this assay, SNP(s) [rs78326423] are located under a primer or probe sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.

Set Membership:

 Intragenic Intronic Non-exonic DGV Variation

Panther Classification:

Gene Ontology Categories:

Function(s) Process(es)


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