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See other FANCA CNV Assays ›
Gene Symbol
FANCA
Assay Reference Genome
Location

Chr.16:89760280 on build GRCh38
Cytoband
16q24.3
Assay ID Hs03925380_cn
Size
Availability Made To Order
Catalog # 4400291
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Assay Details

Target Gene Details

Entrez Gene ID:

 2175

Gene Name:

 Fanconi anemia complementation group A

Gene Aliases:

 FA, FA-H, FA1, FAA, FACA, FAH, FANCH

Location:

 Chr.16:89737551-89816658 on Build GRCh38

Assay Gene Location:

 Within Intron 30
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
FANCA NM_000135.2 NP_000126.2
NM_001286167.1 NP_001273096.1
XM_005256294.4 XP_005256351.1
XM_011522945.2 XP_011521247.1
XM_011522946.2 XP_011521248.1
XM_011522947.2 XP_011521249.1
XM_017023044.1 XP_016878533.1
XM_017023045.1 XP_016878534.1
AK299282.1
AK301168.1
X99226.1 CAA67610.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
nsv457624 Chr.16:89738447 - 89915950 on Build GRCh38 Loss ZNF276 LOC105371419 FANCA TCF25 SPIRE2 LOC107984817
esv2762221 Chr.16:89610380 - 90039318 on Build GRCh38 Gain+Loss SPATA2L AFG3L1P CHMP1A DBNDD1 VPS9D1 FANCA DEF8 GAS8-AS1 VPS9D1-AS1 TUBB3 CDK10 ZNF276 GAS8 LOC105371419 DPEP1 SPATA33 MC1R CENPBD1 TCF25 SPIRE2 LOC107984817
nsv457623 Chr.16:89664419 - 89853617 on Build GRCh38 Gain VPS9D1-AS1 SPATA2L CDK10 ZNF276 VPS9D1 LOC105371419 FANCA SPATA33 SPIRE2 LOC107984817
nsv428331 Chr.16:89216635 - 90185980 on Build GRCh38 Gain+Loss LOC100287036 SPATA2L ZNF778 CHMP1A SNORD68 VPS9D1 FAM157C RPL13 GAS8-AS1 LOC105371414 VPS9D1-AS1 TUBB8P7 URAHP TUBB3 LOC101927817 LOC105371419 DPEP1 ANKRD11 AFG3L1P PRDM7 SPG7 CPNE7 DBNDD1 FANCA DEF8 CDK10 ZNF276 GAS8 SPATA33 MC1R CENPBD1 TCF25 SPIRE2 LOC107984817
nsv833331 Chr.16:89726091 - 89849806 on Build GRCh38 Gain+Loss ZNF276 LOC105371419 FANCA SPIRE2 LOC107984817
nsv482951 Chr.16:88633593 - 90228345 on Build GRCh38 Loss SPATA2L LOC105371409 CHMP1A SNORD68 CBFA2T3 FAM157C RPL13 GAS8-AS1 URAHP TUBB3 MIR4722 LOC101927817 MVD SLC22A31 ANKRD11 SNAI3-AS1 IL17C CTU2 AFG3L1P PRDM7 CDT1 CPNE7 DBNDD1 APRT LOC100289580 FANCA DEF8 LOC400558 CYBA SPATA33 ACSF3 TCF25 SPIRE2 TRAPPC2L LOC107984817 LOC100287036 ZNF778 LINC00304 VPS9D1 GALNS LOC100129697 LOC105371414 VPS9D1-AS1 TUBB8P7 CDH15 SNAI3 LOC105371419 DPEP1 SPG7 PIEZO1 LOC107987238 LOC339059 LOC101927793 CDK10 PABPN1L ZNF276 GAS8 MC1R CENPBD1 RNF166
nsv509639 Chr.16:89513538 - 89775915 on Build GRCh38 Insertion SPATA2L SPG7 CHMP1A CPNE7 SNORD68 VPS9D1 FANCA RPL13 VPS9D1-AS1 CDK10 ZNF276 DPEP1 SPATA33

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