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See other ABCA3 CNV Assays ›
Gene Symbol
ABCA3
Assay Reference Genome
Location

Chr.16:2277036 on build GRCh38
Cytoband
16p13.3
Assay ID Hs03930114_cn
Size
Availability Made To Order
Catalog # 4400291
Price
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Assay Details

Target Gene Details

Entrez Gene ID:

 21

Gene Name:

 ATP binding cassette subfamily A member 3

Gene Aliases:

 ABC-C, ABC3, EST111653, LBM180, SMDP3

Location:

 Chr.16:2275878-2340746 on Build GRCh38

Assay Gene Location:

 Within Intron 32
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
ABCA3 NM_001089.2 NP_001080.2
AB070929.1 BAB86781.1
AB210044.1 BAE06126.1
BC140895.1
BC146866.1
BC151840.1
U78735.1 AAC50967.1
X97187.1 CAA65825.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
esv2422427 Chr.16:10001 - 2723164 on Build GRCh38 Duplication MSLN RGS11 CEMP1 ERVK13-1 PTX4 AMDHD2 MIR3177 JMJD8 LOC107984876 LOC105371184 ABCA17P SLC9A3R2 RHOT2 RPL3L MLST8 CCDC78 SNORA10 C1QTNF8 MIR3176 CLCN7 TPSD1 SNORA78 MAPK8IP3 TSR3 MIR3178 MEIOB MIR6768 LUC7L RHBDF1 MRPS34 ARHGDIG TMEM8A NPRL3 E4F1 PRSS27 RAB26 TPSAB1 CHTF18 MCRIP2 STUB1 FBXL16 WDR24 NPW CCDC154 DNASE1L2 FAM234A LMF1-AS1 TRAF7 SSTR5 BAIAP3 SNORA64 CASKIN1 GNG13 WASIR2 C16orf91 RNF151 RAB40C ATP6V0C NHLRC4 DECR2 NME3 MIR5587 RPL23AP5 LOC105371046 RPS2 PIGQ RNPS1 TPSG1 LOC106660606 TPSB2 NOXO1 MIR4516 PKD1 HBM BRICD5 FLJ42627 TSC2 ECI1 PRSS29P WDR90 UBE2I HAGHL DDX11L10 HS3ST6 MIR6767 LOC105371045 METTL26 CRAMP1 ZNF598 PRR35 MIR6859-4 PRR25 ABCA3 MIR3677 PDPK1 PGP SNHG19 NME4 LMF1 LOC105371049 MIR940 SNHG9 LOC100134368 GFER LINC00254 SYNGR3 LOC652276 LOC107987233 HBA2 NUBP2 NARFL SNORD60 GNPTG LINC00235 WFIKKN1 SSTR5-AS1 MRPL28 LOC105371038 FAM173A LOC105371047 HAGH LOC729652 TBC1D24 CAPN15 METRN NDUFB10 CCNF HBZ MIR4717 IFT140 TELO2 SNRNP25 UNKL SOX8 FAHD1 HBQ1 RPUSD1 IGFALS RAB11FIP3 HN1L MIR6511B1 EME2 LOC100287175 PDIA2 POLR3K MPG TBL3 MIR3180-5 NTN3 AXIN1 MSRB1 HBA1 LOC101929280 RHBDL1 KCTD5 MIR1225 NTHL1 C16orf59 SPSB3 MIR662 CACNA1H TMEM204
nsv471072 Chr.16:1971892 - 2317508 on Build GRCh38 Loss BRICD5 TSC2 ECI1 E4F1 RAB26 MIR4717 NPW DNASE1L2 ZNF598 TRAF7 SLC9A3R2 MIR6511B1 CASKIN1 ABCA3 MLST8 MIR3677 PGP SNHG19 LOC105371049 MIR940 GFER TBL3 MIR3180-5 SYNGR3 RNPS1 LOC106660606 SNORD60 NOXO1 MIR1225 NTHL1 MIR4516 PKD1
nsv457353 Chr.16:2255538 - 2365929 on Build GRCh38 Loss LOC106660606 MIR4717 ABCA17P MIR940 RNPS1 ABCA3 MIR3677
nsv1052260 Chr.16:2074546 - 2629655 on Build GRCh38 Gain MIR6768 BRICD5 TSC2 ECI1 CEMP1 LOC729652 TBC1D24 E4F1 RAB26 CCNF AMDHD2 MIR4717 MIR6767 ABCA17P DNASE1L2 TRAF7 MIR6511B1 CASKIN1 ABCA3 MLST8 MIR3677 PDPK1 PGP SNHG19 ATP6V0C LOC105371049 MIR940 MIR3180-5 NTN3 RNPS1 LOC106660606 LOC652276 SNORD60 MIR1225 C16orf59 MIR4516 PKD1 MIR3178
nsv952902 Chr.16:2143400 - 2339999 on Build GRCh38 Deletion PGP BRICD5 SNHG19 ECI1 MIR940 E4F1 RAB26 RNPS1 LOC106660606 MIR4717 SNORD60 DNASE1L2 TRAF7 CASKIN1 ABCA3 MLST8 MIR3677

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