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See other MAPK8IP3 CNV Assays ›
Gene Symbol
MAPK8IP3
Assay Reference Genome
Location

Chr.16:1707334 on build GRCh38
Cytoband
16p13.3
Assay ID Hs03930285_cn
Size
Availability Made To Order
Catalog # 4400291
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Assay Details

Target Gene Details

Entrez Gene ID:

 23162

Gene Name:

 mitogen-activated protein kinase 8 interacting protein 3

Gene Aliases:

 JIP-3, JIP3, JSAP1, SYD2, syd

Location:

 Chr.16:1706183-1770317 on Build GRCh38

Assay Gene Location:

 Within Intron 1
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
MAPK8IP3 NM_001040439.1 NP_001035529.1
NM_001318852.1 NP_001305781.1
NM_015133.4 NP_055948.2
XM_005255190.2 XP_005255247.1
XM_006720869.2 XP_006720932.1
XM_011522429.2 XP_011520731.1
XM_011522430.2 XP_011520732.1
XM_011522431.2 XP_011520733.1
XM_011522432.2 XP_011520734.1
XM_017023079.1 XP_016878568.1
XM_017023080.1 XP_016878569.1
AB028989.2
AB621811.1
AK024437.1 BAB15727.1
BC137123.1
BC137124.1
BC144486.1
BC150266.1
BY795428.2
CN405914.1
CR749696.1 CAH18476.1
DA135446.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
dgv4856n54 Chr.16:1600945 - 1813519 on Build GRCh38 Loss SPSB3 IGFALS MIR3177 HAGH NUBP2 MAPK8IP3 HN1L LOC105371046 CRAMP1 NME3 IFT140 MRPS34 EME2
esv2422427 Chr.16:10001 - 2723164 on Build GRCh38 Duplication LUC7L IGFALS TMEM204 MPG HBQ1 TPSG1 METTL26 HS3ST6 ABCA17P LMF1-AS1 LOC652276 MIR940 MIR3677 CLCN7 NARFL EME2 WFIKKN1 LOC100134368 MSRB1 LOC105371184 HAGHL SNHG9 WDR90 HBA1 HBZ CACNA1H LINC00235 MIR5587 MIR6511B1 SNORA10 MSLN SNORD60 TBC1D24 MRPL28 PRSS29P SLC9A3R2 SNORA64 RAB40C CAPN15 RHOT2 RPS2 MIR3180-5 HAGH WASIR2 LOC105371047 SYNGR3 MIR3176 LOC105371045 MAPK8IP3 MEIOB TRAF7 NPRL3 PGP TPSAB1 STUB1 POLR3K GFER NHLRC4 IFT140 RHBDF1 CCDC78 E4F1 TPSB2 ATP6V0C MIR6859-4 ECI1 LOC106660606 SOX8 AMDHD2 MIR1225 TBL3 SNORA78 DECR2 GNPTG MIR662 RPL23AP5 PRR35 LOC101929280 RHBDL1 CRAMP1 PKD1 BRICD5 MCRIP2 RGS11 NTN3 WDR24 PDPK1 TSC2 AXIN1 UNKL TPSD1 C16orf59 NOXO1 C1QTNF8 MIR6767 TMEM8A UBE2I LOC100287175 CHTF18 RPL3L RNPS1 ABCA3 NME3 BAIAP3 LINC00254 FAHD1 JMJD8 METRN LOC107987233 FAM173A MIR3177 NUBP2 HBM NPW NTHL1 HN1L LOC105371046 SSTR5 MIR4717 PIGQ RAB26 SNRNP25 HBA2 PRSS27 C16orf91 KCTD5 DDX11L10 DNASE1L2 SPSB3 LOC105371038 RNF151 RPUSD1 GNG13 FAM234A FBXL16 MIR6768 LOC729652 ARHGDIG LMF1 ERVK13-1 RAB11FIP3 SNHG19 TELO2 PDIA2 CEMP1 FLJ42627 CCNF SSTR5-AS1 MLST8 PTX4 MIR4516 NDUFB10 ZNF598 CASKIN1 NME4 CCDC154 LOC105371049 MIR3178 MRPS34 PRR25 TSR3 LOC107984876
nsv1051692 Chr.16:1505070 - 1866102 on Build GRCh38 Loss SPSB3 IGFALS TMEM204 MIR3177 HAGH NUBP2 LOC105371047 MAPK8IP3 HN1L LOC105371046 MEIOB CRAMP1 NME3 IFT140 TELO2 MRPS34 EME2 FAHD1
nsv1160328 Chr.16:1704619 - 1797867 on Build GRCh38 Deletion MAPK8IP3 SPSB3 IGFALS MIR3177 NUBP2 NME3 MRPS34 EME2
nsv833118 Chr.16:1550716 - 1711581 on Build GRCh38 Loss MAPK8IP3 HN1L LOC105371046 TMEM204 CRAMP1 IFT140
nsv518641 Chr.16:1645775 - 1835631 on Build GRCh38 Loss SPSB3 IGFALS MIR3177 HAGH NUBP2 MAPK8IP3 HN1L MEIOB CRAMP1 NME3 MRPS34 EME2 FAHD1

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More Information


Additional Information:

For this assay, SNP(s) [rs78220989] are located under a primer or probe sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.

Set Membership:

 Intragenic Intronic Non-exonic DGV Variation

Panther Classification:

Molecular Function -

scaffold/adaptor protein

Gene Ontology Categories:

Function(s) Process(es)


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