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See other LOC105371049 CNV Assays ›
Gene Symbol
LOC105371049
Assay Reference Genome
Location

Chr.16:2094611 on build GRCh38
Cytoband
16p13.3
Assay ID Hs03930373_cn
Size
Availability Made To Order
Catalog # 4400291
Price
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Assay Details

Target Gene Details

Entrez Gene ID:

 105371049

Gene Name:

 uncharacterized LOC105371049

Gene Aliases:

 -

Location:

 Chr.16:2091436-2095017 on Build GRCh38

Assay Gene Location:

 Within Intron 2
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
LOC105371049 NR_135175.1
BM824397.1

Target Gene Details

Entrez Gene ID:

 5310

Gene Name:

 polycystin 1, transient receptor potential channel interacting

Gene Aliases:

 PBP, Pc-1, TRPP1

Location:

 Chr.16:2088708-2135898 on Build GRCh38

Assay Gene Location:

 Within Intron 39
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
PKD1 NM_000296.3 NP_000287.3
NM_001009944.2 NP_001009944.2
XM_005255370.3 XP_005255427.1
XM_011522528.2 XP_011520830.1
XM_011522529.2 XP_011520831.1
XM_011522530.2 XP_011520832.1
XM_011522532.2 XP_011520834.1
XM_011522534.2 XP_011520836.1
XM_011522535.2 XP_011520837.1
XM_011522537.2 XP_011520839.1
XM_017023285.1 XP_016878774.1
AB209025.1 BAD92262.1
AB209675.1 BAD92912.1
L33243.1 AAC37576.1
U24497.1 AAC50128.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
dgv4862n54 Chr.16:2088868 - 2095128 on Build GRCh38 Loss LOC105371049 MIR1225 PKD1
esv2422427 Chr.16:10001 - 2723164 on Build GRCh38 Duplication MIR3180-5 CRAMP1 DDX11L10 STUB1 FAM173A RPL23AP5 MIR3677 MIR1225 CACNA1H NTHL1 MIR6768 LINC00254 HN1L GNG13 ZNF598 E4F1 SNORD60 TPSAB1 JMJD8 PGP PRSS27 PRR25 NHLRC4 PDIA2 NDUFB10 WASIR2 LOC105371046 RHOT2 LOC105371045 HBQ1 MEIOB MIR662 HAGHL FAM234A TBC1D24 HBM SNHG19 POLR3K WDR24 HBZ EME2 LOC101929280 PIGQ RAB26 MRPL28 MIR4717 CHTF18 HBA2 WFIKKN1 SOX8 C16orf91 C1QTNF8 WDR90 ATP6V0C C16orf59 HBA1 NOXO1 RAB40C RGS11 MIR6859-4 TPSB2 LOC107987233 RHBDL1 LOC652276 MPG ABCA17P PDPK1 METTL26 TRAF7 MIR3176 CCDC78 MIR6767 ABCA3 LMF1-AS1 KCTD5 NME3 MCRIP2 ERVK13-1 TMEM8A SPSB3 CASKIN1 UNKL PTX4 FBXL16 CCDC154 TPSD1 LOC729652 RPL3L MIR940 UBE2I NPW RHBDF1 PKD1 RNPS1 LOC105371038 SNRNP25 ARHGDIG NARFL MIR3177 HAGH BAIAP3 NUBP2 LOC105371047 AXIN1 LUC7L MRPS34 LOC105371184 RPS2 SSTR5-AS1 NPRL3 SLC9A3R2 CLCN7 PRSS29P SNORA10 ECI1 GFER TSR3 MLST8 LOC105371049 NTN3 MIR5587 TBL3 SNORA64 GNPTG TSC2 MSRB1 LMF1 LOC100134368 MIR3178 AMDHD2 TELO2 DECR2 MAPK8IP3 PRR35 BRICD5 IGFALS RPUSD1 RNF151 LOC100287175 RAB11FIP3 MIR4516 DNASE1L2 IFT140 SNORA78 SYNGR3 MIR6511B1 LINC00235 CAPN15 CEMP1 SNHG9 TPSG1 LOC107984876 FLJ42627 FAHD1 CCNF SSTR5 NME4 MSLN METRN LOC106660606 TMEM204 HS3ST6
dgv4859n54 Chr.16:1971892 - 2264400 on Build GRCh38 Loss MIR3180-5 RAB26 TSC2 MIR1225 CASKIN1 NTHL1 BRICD5 ZNF598 MIR4516 DNASE1L2 E4F1 SYNGR3 SNORD60 NPW NOXO1 PKD1 MIR6511B1 RNPS1 PGP SLC9A3R2 ECI1 GFER MLST8 LOC105371049 SNHG19 TBL3 TRAF7
nsv952901 Chr.16:1888800 - 2135899 on Build GRCh38 Deletion SNORA64 NDUFB10 SNHG9 TSC2 MSRB1 MIR1225 NTHL1 RPS2 SLC9A3R2 RNF151 ZNF598 SNORA10 GFER MIR4516 RPL3L LOC105371049 SNORA78 SYNGR3 NPW NOXO1 PKD1 MIR6511B1 TBL3 HS3ST6
nsv1160329 Chr.16:1961727 - 2128574 on Build GRCh38 Deletion SNORA64 NDUFB10 SNHG9 TSC2 MIR1225 NTHL1 RPS2 SLC9A3R2 RNF151 ZNF598 SNORA10 GFER LOC105371049 SNORA78 SYNGR3 NPW NOXO1 PKD1 MIR6511B1 TBL3
dgv4861n54 Chr.16:2083900 - 2246850 on Build GRCh38 Loss MIR3180-5 PGP RAB26 TSC2 MIR1225 CASKIN1 BRICD5 ECI1 MIR4516 DNASE1L2 MLST8 LOC105371049 E4F1 SNORD60 PKD1 SNHG19 MIR6511B1 TRAF7
nsv571190 Chr.16:2055054 - 2200730 on Build GRCh38 Loss MIR3180-5 RAB26 MIR4516 TSC2 LOC105371049 SNORD60 MIR1225 PKD1 CASKIN1 SNHG19 MIR6511B1 TRAF7
nsv827505 Chr.16:2094447 - 2140472 on Build GRCh38 Gain MIR3180-5 MIR4516 LOC105371049 PKD1 MIR6511B1
nsv1052260 Chr.16:2074546 - 2629655 on Build GRCh38 Gain MIR3180-5 MIR6767 ABCA3 RAB26 MIR4717 TSC2 MIR3178 MIR3677 AMDHD2 MIR1225 CASKIN1 MIR6768 BRICD5 LOC729652 MIR4516 ATP6V0C DNASE1L2 C16orf59 MIR940 E4F1 SNORD60 PKD1 MIR6511B1 RNPS1 PGP CEMP1 LOC652276 CCNF ECI1 ABCA17P MLST8 LOC105371049 NTN3 LOC106660606 TBC1D24 SNHG19 PDPK1 TRAF7
nsv471381 Chr.16:2088710 - 2135898 on Build GRCh38 Gain MIR4516 TSC2 LOC105371049 MIR1225 PKD1 MIR6511B1
esv26918 Chr.16:2091142 - 2123135 on Build GRCh38 Gain+Loss LOC105371049 PKD1 MIR6511B1

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More Information


Set Membership:

 Intragenic Intronic Non-exonic DGV Variation

Panther Classification:

Molecular Function -

ion channel

Gene Ontology Categories:

Function(s) Process(es)


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