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See other ABCA3 CNV Assays ›
Gene Symbol
ABCA3
Assay Reference Genome
Location

Chr.16:2289126 on build GRCh38
Cytoband
16p13.3
Assay ID Hs03932194_cn
Size
Availability Made To Order
Catalog # 4400291
Price
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Assay Details

Target Gene Details

Entrez Gene ID:

 21

Gene Name:

 ATP binding cassette subfamily A member 3

Gene Aliases:

 ABC-C, ABC3, EST111653, LBM180, SMDP3

Location:

 Chr.16:2275878-2340746 on Build GRCh38

Assay Gene Location:

 Within Intron 20
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
ABCA3 NM_001089.2 NP_001080.2
AB070929.1 BAB86781.1
AB210044.1 BAE06126.1
AK310864.1 20 3571
BC140895.1
BC146866.1
BC151840.1
U78735.1 AAC50967.1
X97187.1 CAA65825.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
esv2422427 Chr.16:10001 - 2723164 on Build GRCh38 Duplication MPG LOC107987233 MIR6511B1 TMEM8A NPRL3 MEIOB TBC1D24 SSTR5 PKD1 MIR5587 RGS11 NTN3 LOC100134368 SNORA10 RAB40C RPL23AP5 FAHD1 CASKIN1 SNHG9 ARHGDIG CCDC78 METTL26 PRSS29P METRN UBE2I ABCA17P WFIKKN1 ECI1 LOC729652 CLCN7 TSR3 NOXO1 PRR25 LOC105371049 POLR3K RHBDL1 NME3 SNORA78 CHTF18 DDX11L10 RPUSD1 TPSD1 MIR4516 NDUFB10 ATP6V0C CEMP1 PDIA2 FBXL16 SYNGR3 AMDHD2 MIR940 TRAF7 LOC105371184 MIR3176 GNG13 NPW FLJ42627 FAM173A TELO2 WDR24 ERVK13-1 CCNF LOC105371038 LOC106660606 MIR6768 HS3ST6 HBA2 WDR90 STUB1 MIR3180-5 PRR35 C1QTNF8 LMF1 RNPS1 RPS2 BRICD5 TSC2 IGFALS HBQ1 HAGH LOC652276 JMJD8 MLST8 PRSS27 GNPTG PGP BAIAP3 LINC00254 SNRNP25 SNORA64 LMF1-AS1 MIR662 SNORD60 MIR3177 MIR1225 AXIN1 ABCA3 C16orf59 RAB26 CACNA1H LOC107984876 TPSG1 MAPK8IP3 NME4 LOC101929280 IFT140 EME2 CRAMP1 SLC9A3R2 MRPL28 RNF151 HN1L RHOT2 RPL3L SSTR5-AS1 SOX8 PIGQ UNKL MSRB1 LOC100287175 DECR2 LOC105371045 DNASE1L2 NTHL1 CAPN15 C16orf91 HAGHL TMEM204 LOC105371046 MSLN LINC00235 RHBDF1 MIR4717 HBZ WASIR2 MCRIP2 HBM E4F1 ZNF598 SNHG19 PTX4 PDPK1 KCTD5 LOC105371047 SPSB3 MIR6859-4 LUC7L NUBP2 HBA1 MIR3178 NHLRC4 FAM234A MIR3677 MIR6767 NARFL TPSB2 MRPS34 TPSAB1 CCDC154 RAB11FIP3 GFER TBL3
nsv471072 Chr.16:1971892 - 2317508 on Build GRCh38 Loss MLST8 PGP DNASE1L2 NTHL1 MIR6511B1 MIR4516 PKD1 SNORD60 MIR1225 SYNGR3 ABCA3 MIR4717 MIR940 TRAF7 CASKIN1 RAB26 E4F1 NPW ZNF598 SNHG19 LOC106660606 ECI1 SLC9A3R2 MIR3180-5 MIR3677 RNPS1 BRICD5 TSC2 NOXO1 LOC105371049 GFER TBL3
nsv571201 Chr.16:2255538 - 2365929 on Build GRCh38 Loss MIR3677 RNPS1 ABCA3 LOC106660606 ABCA17P MIR4717 MIR940
nsv1052260 Chr.16:2074546 - 2629655 on Build GRCh38 Gain LOC652276 MLST8 PGP DNASE1L2 MIR6511B1 TBC1D24 MIR4516 ATP6V0C PKD1 CEMP1 SNORD60 MIR1225 ABCA3 AMDHD2 MIR4717 C16orf59 MIR940 NTN3 TRAF7 CASKIN1 RAB26 E4F1 SNHG19 PDPK1 CCNF LOC106660606 ABCA17P MIR6768 ECI1 MIR3180-5 MIR3178 LOC729652 MIR3677 RNPS1 MIR6767 BRICD5 TSC2 LOC105371049
nsv952902 Chr.16:2143400 - 2339999 on Build GRCh38 Deletion TRAF7 CASKIN1 RAB26 E4F1 MLST8 SNHG19 PGP DNASE1L2 LOC106660606 ECI1 MIR3677 RNPS1 BRICD5 SNORD60 ABCA3 MIR4717 MIR940
nsv571202 Chr.16:2278649 - 2289619 on Build GRCh38 Loss ABCA3

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