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See other LOC105371049 CNV Assays ›
Gene Symbol
LOC105371049
Assay Reference Genome
Location

Chr.16:2092011 on build GRCh38
Cytoband
16p13.3
Assay ID Hs03936202_cn
Size
Availability Made To Order
Catalog # 4400291
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Assay Details

Target Gene Details

Entrez Gene ID:

 105371049

Gene Name:

 uncharacterized LOC105371049

Gene Aliases:

 -

Location:

 Chr.16:2091436-2095017 on Build GRCh38

Assay Gene Location:

 Within Intron 1
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
LOC105371049 NR_135175.1
BM824397.1

Target Gene Details

Entrez Gene ID:

 5310

Gene Name:

 polycystin 1, transient receptor potential channel interacting

Gene Aliases:

 PBP, Pc-1, TRPP1

Location:

 Chr.16:2088708-2135898 on Build GRCh38

Assay Gene Location:

 Overlaps Intron 45 - Exon 45
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
PKD1 NM_000296.3 NP_000287.3
NM_001009944.2 NP_001009944.2
XM_005255370.3 XP_005255427.1
XM_011522528.2 XP_011520830.1
XM_011522529.2 XP_011520831.1
XM_011522530.2 XP_011520832.1
XM_011522532.2 XP_011520834.1
XM_011522534.2 XP_011520836.1
XM_011522535.2 XP_011520837.1
XM_011522537.2 XP_011520839.1
XM_017023285.1 XP_016878774.1
AB209025.1 BAD92262.1
AB209675.1 BAD92912.1
L33243.1 AAC37576.1
U24497.1 AAC50128.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
dgv4862n54 Chr.16:2088868 - 2095128 on Build GRCh38 Loss PKD1 LOC105371049 MIR1225
esv2422427 Chr.16:10001 - 2723164 on Build GRCh38 Duplication MIR6859-4 MLST8 MRPL28 SSTR5-AS1 FLJ42627 PTX4 NUBP2 MIR3180-5 SNORD60 METTL26 PIGQ PRR25 FAM173A RPL3L LINC00235 RHBDF1 E4F1 PRSS29P HAGH DECR2 LOC100134368 HS3ST6 SSTR5 MIR4717 MIR6767 SPSB3 TBC1D24 LUC7L UBE2I RPL23AP5 MIR940 WDR24 TPSD1 TSR3 HBQ1 C16orf59 TSC2 CCDC78 CLCN7 MIR3677 MIR3177 ATP6V0C RGS11 C16orf91 LOC105371047 PKD1 LMF1-AS1 ERVK13-1 MEIOB CCNF ZNF598 ARHGDIG LOC106660606 NME3 RHOT2 HBZ WDR90 RPS2 FAHD1 PDIA2 SNORA78 CASKIN1 UNKL NHLRC4 MRPS34 NPRL3 LOC107987233 HAGHL AMDHD2 WASIR2 TPSB2 MAPK8IP3 LOC105371046 DDX11L10 ABCA3 MIR3176 RAB40C SYNGR3 NTHL1 RNF151 IFT140 CAPN15 KCTD5 HBA1 MIR662 HBM BRICD5 CCDC154 JMJD8 MIR3178 METRN LOC105371184 LMF1 MIR6511B1 LOC101929280 FAM234A MIR6768 LOC729652 SNHG9 SOX8 PDPK1 TPSG1 TRAF7 TELO2 AXIN1 ABCA17P TMEM204 MIR5587 LINC00254 CRAMP1 RNPS1 MIR4516 FBXL16 RAB26 NDUFB10 LOC100287175 NOXO1 HN1L SNHG19 MCRIP2 PRSS27 SNORA10 GFER MSRB1 WFIKKN1 SNORA64 DNASE1L2 RHBDL1 STUB1 LOC107984876 HBA2 IGFALS SNRNP25 NPW BAIAP3 LOC105371045 MIR1225 GNPTG RAB11FIP3 NME4 CACNA1H EME2 TMEM8A MPG PGP TBL3 LOC652276 LOC105371038 PRR35 POLR3K LOC105371049 RPUSD1 ECI1 TPSAB1 SLC9A3R2 CEMP1 C1QTNF8 NARFL NTN3 CHTF18 GNG13 MSLN
nsv471072 Chr.16:1971892 - 2317508 on Build GRCh38 Loss SNHG19 PKD1 MLST8 GFER ZNF598 BRICD5 DNASE1L2 LOC106660606 MIR3180-5 SNORD60 E4F1 NPW MIR6511B1 MIR1225 CASKIN1 MIR4717 TRAF7 PGP TBL3 LOC105371049 ECI1 MIR940 SLC9A3R2 TSC2 ABCA3 RNPS1 MIR4516 MIR3677 RAB26 SYNGR3 NTHL1 NOXO1
nsv952901 Chr.16:1888800 - 2135899 on Build GRCh38 Deletion RNF151 TBL3 PKD1 SNORA10 GFER LOC105371049 MSRB1 ZNF598 SNORA64 SLC9A3R2 TSC2 RPL3L NPW MIR6511B1 MIR4516 MIR1225 SYNGR3 RPS2 NDUFB10 NTHL1 SNHG9 SNORA78 NOXO1 HS3ST6
dgv4861n54 Chr.16:2083900 - 2246850 on Build GRCh38 Loss TRAF7 SNHG19 PGP PKD1 MLST8 LOC105371049 BRICD5 ECI1 DNASE1L2 MIR3180-5 SNORD60 TSC2 E4F1 MIR6511B1 MIR4516 RAB26 MIR1225 CASKIN1
nsv1160329 Chr.16:1961727 - 2128574 on Build GRCh38 Deletion RNF151 TBL3 PKD1 SNORA10 GFER LOC105371049 ZNF598 SNORA64 SLC9A3R2 TSC2 NPW MIR6511B1 MIR1225 SYNGR3 RPS2 NDUFB10 NTHL1 SNHG9 SNORA78 NOXO1
nsv457349 Chr.16:2055054 - 2200730 on Build GRCh38 Loss TRAF7 SNHG19 PKD1 TSC2 LOC105371049 MIR6511B1 MIR4516 RAB26 MIR1225 MIR3180-5 CASKIN1 SNORD60
nsv482186 Chr.16:2088710 - 2135898 on Build GRCh38 Gain PKD1 TSC2 LOC105371049 MIR6511B1 MIR4516 MIR1225
nsv1052260 Chr.16:2074546 - 2629655 on Build GRCh38 Gain SNHG19 PKD1 MLST8 CCNF BRICD5 DNASE1L2 LOC106660606 MIR3178 MIR3180-5 SNORD60 E4F1 MIR6511B1 MIR1225 MIR6768 LOC729652 CASKIN1 PDPK1 MIR4717 TRAF7 MIR6767 PGP LOC652276 LOC105371049 TBC1D24 ECI1 MIR940 AMDHD2 ABCA17P CEMP1 C16orf59 TSC2 NTN3 ABCA3 RNPS1 MIR4516 MIR3677 RAB26 ATP6V0C
esv26918 Chr.16:2091142 - 2123135 on Build GRCh38 Gain+Loss PKD1 LOC105371049 MIR6511B1

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More Information


Set Membership:

 Intragenic Intronic Non-exonic DGV Variation

Panther Classification:

Molecular Function -

ion channel

Gene Ontology Categories:

Function(s) Process(es)


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