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See other CASKIN1 CNV Assays ›
Gene Symbol
CASKIN1
Assay Reference Genome
Location

Chr.16:2184441 on build GRCh38
Cytoband
16p13.3
Assay ID Hs03937625_cn
Size
Availability Made To Order
Catalog # 4400291
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Assay Details

Target Gene Details

Entrez Gene ID:

 57524

Gene Name:

 CASK interacting protein 1

Gene Aliases:

 ANKS5A

Location:

 Chr.16:2177183-2196464 on Build GRCh38

Assay Gene Location:

 Within Intron 14
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
CASKIN1 NM_020764.3 NP_065815.1
AB037727.1 BAA92544.1
AF451977.1 AAL49758.1
BC042011.1 AAH42011.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
esv2422427 Chr.16:10001 - 2723164 on Build GRCh38 Duplication PTX4 RHBDF1 SNORA64 FLJ42627 DDX11L10 MIR3178 CCDC78 RHOT2 MRPL28 RNPS1 MIR3677 AXIN1 KCTD5 TBC1D24 SNORA10 NARFL LOC107987233 UBE2I PDPK1 MIR6767 SOX8 RHBDL1 TELO2 HAGHL LINC00254 TSC2 IGFALS MSRB1 SLC9A3R2 FAM173A CASKIN1 PGP JMJD8 LOC105371046 LOC107984876 AMDHD2 NDUFB10 ARHGDIG TSR3 CAPN15 SPSB3 NTHL1 RPL3L NOXO1 TBL3 FAM234A MIR6859-4 ABCA17P MCRIP2 RNF151 E4F1 NPW SYNGR3 LOC105371038 FAHD1 WDR90 LMF1 MIR940 SSTR5-AS1 MIR3177 HBA1 NUBP2 LOC652276 MAPK8IP3 WDR24 PRR25 CHTF18 TMEM8A HS3ST6 PRR35 RAB40C RAB11FIP3 NTN3 MPG CCNF MIR3180-5 SNHG19 C16orf59 POLR3K MIR6768 GNPTG MEIOB HBA2 HN1L PIGQ ABCA3 MRPS34 MIR3176 WFIKKN1 MIR4717 ECI1 MIR1225 NPRL3 BAIAP3 HBQ1 LOC105371049 LOC105371047 MLST8 MIR5587 TPSAB1 RGS11 LOC101929280 MIR4516 RAB26 PKD1 MIR6511B1 LOC729652 CCDC154 FBXL16 LOC100287175 PRSS27 DNASE1L2 CEMP1 ZNF598 SSTR5 DECR2 IFT140 NME4 BRICD5 TPSG1 WASIR2 RPS2 LOC105371045 LUC7L SNORD60 PDIA2 HBZ RPUSD1 TPSB2 MSLN ATP6V0C MIR662 LOC106660606 METRN C16orf91 METTL26 TRAF7 STUB1 RPL23AP5 PRSS29P ERVK13-1 TMEM204 LOC100134368 SNORA78 CACNA1H CLCN7 NME3 LMF1-AS1 EME2 UNKL C1QTNF8 NHLRC4 SNRNP25 HBM HAGH LOC105371184 SNHG9 LINC00235 CRAMP1 TPSD1 GNG13 GFER
nsv471072 Chr.16:1971892 - 2317508 on Build GRCh38 Loss SNHG19 SNORD60 NTHL1 NOXO1 TBL3 RNPS1 MIR3677 ABCA3 LOC106660606 MIR4717 E4F1 ECI1 NPW SYNGR3 MIR1225 TRAF7 LOC105371049 MLST8 MIR940 MIR4516 RAB26 PKD1 MIR6511B1 DNASE1L2 ZNF598 TSC2 SLC9A3R2 CASKIN1 BRICD5 GFER MIR3180-5 PGP
dgv4861n54 Chr.16:2083900 - 2246850 on Build GRCh38 Loss LOC105371049 MLST8 SNHG19 SNORD60 MIR4516 RAB26 PKD1 MIR6511B1 DNASE1L2 E4F1 ECI1 TSC2 MIR1225 TRAF7 CASKIN1 BRICD5 MIR3180-5 PGP
dgv4863n54 Chr.16:2141733 - 2274302 on Build GRCh38 Loss MLST8 SNHG19 SNORD60 MIR940 RAB26 RNPS1 MIR3677 LOC106660606 DNASE1L2 E4F1 ECI1 TRAF7 CASKIN1 BRICD5 PGP
nsv457349 Chr.16:2055054 - 2200730 on Build GRCh38 Loss LOC105371049 SNHG19 SNORD60 MIR4516 TSC2 RAB26 MIR1225 PKD1 MIR6511B1 TRAF7 CASKIN1 MIR3180-5
nsv457351 Chr.16:2156590 - 2274302 on Build GRCh38 Loss MLST8 LOC106660606 DNASE1L2 MIR940 E4F1 ECI1 TRAF7 CASKIN1 BRICD5 RNPS1 MIR3677 PGP
nsv1052260 Chr.16:2074546 - 2629655 on Build GRCh38 Gain SNHG19 C16orf59 SNORD60 AMDHD2 MIR6768 MIR3178 ABCA17P RNPS1 MIR3677 ATP6V0C ABCA3 LOC106660606 MIR4717 E4F1 ECI1 TBC1D24 MIR1225 TRAF7 LOC105371049 MLST8 MIR940 MIR4516 RAB26 PDPK1 MIR6767 LOC652276 PKD1 MIR6511B1 LOC729652 DNASE1L2 CEMP1 TSC2 NTN3 CASKIN1 BRICD5 CCNF MIR3180-5 PGP
nsv952902 Chr.16:2143400 - 2339999 on Build GRCh38 Deletion MLST8 SNHG19 SNORD60 MIR940 RAB26 RNPS1 MIR3677 ABCA3 LOC106660606 DNASE1L2 MIR4717 E4F1 ECI1 TRAF7 CASKIN1 BRICD5 PGP

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More Information


Set Membership:

 Intragenic Intronic Non-exonic DGV Variation

Panther Classification:

Molecular Function -

scaffold/adaptor protein

Gene Ontology Categories:

Function(s) Process(es)


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