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See other ABCA3 CNV Assays ›
Gene Symbol
ABCA3
Assay Reference Genome
Location

Chr.16:2280845 on build GRCh38
Cytoband
16p13.3
Assay ID Hs03939278_cn
Size
Availability Made To Order
Catalog # 4400291
Price
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Assay Details

Target Gene Details

Entrez Gene ID:

 21

Gene Name:

 ATP binding cassette subfamily A member 3

Gene Aliases:

 ABC-C, ABC3, EST111653, LBM180, SMDP3

Location:

 Chr.16:2275878-2340746 on Build GRCh38

Assay Gene Location:

 Within Intron 28
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
ABCA3 NM_001089.2 NP_001080.2
AB070929.1 BAB86781.1
AB210044.1 BAE06126.1
BC140895.1
BC146866.1
BC151840.1
U78735.1 AAC50967.1
X97187.1 CAA65825.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
esv2422427 Chr.16:10001 - 2723164 on Build GRCh38 Duplication HBA1 E4F1 TPSD1 SNHG19 NUBP2 MIR3177 PRSS29P LMF1 FAM234A CLCN7 SNHG9 CCDC78 WDR24 POLR3K RHBDL1 NME3 HS3ST6 MIR3677 LOC107987233 MPG MIR940 CCNF SLC9A3R2 DECR2 MCRIP2 LUC7L HAGH LOC100287175 SNORD60 PIGQ TELO2 SYNGR3 NHLRC4 CCDC154 LOC105371038 FBXL16 TMEM8A MIR6511B1 UNKL GFER C16orf91 LOC100134368 RGS11 PTX4 RPS2 UBE2I ATP6V0C HAGHL JMJD8 MIR6767 PGP PRSS27 MRPS34 SSTR5-AS1 C16orf59 CRAMP1 RPUSD1 LMF1-AS1 LOC652276 MRPL28 RPL23AP5 TRAF7 IGFALS METTL26 HBZ TSC2 DDX11L10 LOC105371184 NME4 MAPK8IP3 NTHL1 MEIOB LOC105371046 HN1L TPSG1 ECI1 WASIR2 DNASE1L2 MIR3176 C1QTNF8 SOX8 BAIAP3 LOC105371047 TSR3 FAHD1 EME2 AXIN1 LINC00235 TPSAB1 MIR3178 TBC1D24 LOC105371045 FLJ42627 LOC107984876 HBA2 ARHGDIG LOC106660606 CASKIN1 KCTD5 MIR6859-4 RAB26 LINC00254 STUB1 SSTR5 TBL3 AMDHD2 PKD1 PDPK1 SNORA10 RHOT2 NARFL PRR35 SNORA64 SPSB3 NDUFB10 MIR1225 FAM173A HBM TMEM204 LOC101929280 IFT140 WFIKKN1 BRICD5 GNG13 RAB11FIP3 WDR90 ZNF598 RHBDF1 RNPS1 ABCA17P METRN NPRL3 RPL3L LOC105371049 RAB40C SNRNP25 MSLN ABCA3 MLST8 CEMP1 PDIA2 GNPTG NTN3 MIR4717 SNORA78 MIR6768 RNF151 PRR25 TPSB2 CHTF18 HBQ1 MIR4516 ERVK13-1 LOC729652 MSRB1 CAPN15 NOXO1 MIR662 CACNA1H MIR3180-5 MIR5587 NPW
nsv471072 Chr.16:1971892 - 2317508 on Build GRCh38 Loss E4F1 PKD1 SNHG19 PGP MIR1225 BRICD5 ZNF598 RNPS1 MIR3677 LOC105371049 TRAF7 MIR940 SLC9A3R2 ABCA3 TSC2 MLST8 LOC106660606 SNORD60 MIR4717 CASKIN1 SYNGR3 NTHL1 RAB26 MIR4516 MIR6511B1 NOXO1 GFER ECI1 MIR3180-5 DNASE1L2 NPW TBL3
nsv571201 Chr.16:2255538 - 2365929 on Build GRCh38 Loss MIR940 ABCA3 LOC106660606 RNPS1 ABCA17P MIR4717 MIR3677
nsv1052260 Chr.16:2074546 - 2629655 on Build GRCh38 Gain E4F1 AMDHD2 PKD1 ATP6V0C PDPK1 SNHG19 MIR6767 PGP MIR1225 C16orf59 BRICD5 LOC652276 MIR3178 TBC1D24 RNPS1 ABCA17P MIR3677 LOC105371049 TRAF7 MIR940 CCNF ABCA3 TSC2 MLST8 LOC106660606 CEMP1 SNORD60 NTN3 MIR4717 CASKIN1 MIR6768 RAB26 MIR4516 LOC729652 MIR6511B1 ECI1 MIR3180-5 DNASE1L2
nsv952902 Chr.16:2143400 - 2339999 on Build GRCh38 Deletion MIR940 E4F1 ABCA3 SNHG19 MLST8 LOC106660606 SNORD60 MIR4717 CASKIN1 PGP RAB26 BRICD5 RNPS1 ECI1 MIR3677 TRAF7 DNASE1L2
nsv571202 Chr.16:2278649 - 2289619 on Build GRCh38 Loss ABCA3

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