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See other ABCA3 CNV Assays ›
Gene Symbol
ABCA3
Assay Reference Genome
Location

Chr.16:2280845 on build GRCh38
Cytoband
16p13.3
Assay ID Hs03939278_cn
Size
Availability Made To Order
Catalog # 4400291
Price
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Assay Details

Target Gene Details

Entrez Gene ID:

 21

Gene Name:

 ATP binding cassette subfamily A member 3

Gene Aliases:

 ABC-C, ABC3, EST111653, LBM180, SMDP3

Location:

 Chr.16:2275878-2340746 on Build GRCh38

Assay Gene Location:

 Within Intron 28
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
ABCA3 NM_001089.2 NP_001080.2
AB070929.1 BAB86781.1
AB210044.1 BAE06126.1
BC140895.1
BC146866.1
BC151840.1
U78735.1 AAC50967.1
X97187.1 CAA65825.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
esv2422427 Chr.16:10001 - 2723164 on Build GRCh38 Duplication MIR4516 TRAF7 CCDC154 NTHL1 ECI1 NME3 LOC105371045 SNORD60 CRAMP1 MIR3176 C16orf91 NPRL3 C1QTNF8 HS3ST6 CHTF18 NTN3 MSLN TSC2 EME2 RHOT2 METTL26 HAGHL LOC100134368 HBA1 ABCA17P MIR5587 SYNGR3 PRSS29P FBXL16 CEMP1 HBA2 LOC107987233 PKD1 LOC106660606 MIR4717 SNORA10 TPSAB1 MIR940 MIR3178 NPW LMF1-AS1 FAM173A MIR1225 NME4 WDR24 SSTR5 MIR6768 KCTD5 UBE2I MIR6767 CASKIN1 RHBDF1 SSTR5-AS1 JMJD8 STUB1 TBL3 RNPS1 MIR6859-4 ERVK13-1 BRICD5 MLST8 LOC729652 NARFL DNASE1L2 NDUFB10 PIGQ POLR3K GNG13 PRSS27 GFER TBC1D24 HBZ HBQ1 BAIAP3 PRR35 RAB40C RPL23AP5 DECR2 MCRIP2 ATP6V0C MRPS34 SNRNP25 ABCA3 SNHG9 WDR90 FLJ42627 SNHG19 TPSD1 TMEM204 CCNF MIR3177 MPG PTX4 MAPK8IP3 LUC7L MEIOB LOC105371184 SNORA64 PDPK1 ARHGDIG CLCN7 IGFALS IFT140 RNF151 SOX8 WASIR2 LOC105371049 RPL3L CAPN15 NOXO1 RAB26 TMEM8A MSRB1 MIR3677 TSR3 METRN FAM234A PRR25 AMDHD2 CCDC78 AXIN1 CACNA1H HBM C16orf59 HN1L RPUSD1 RHBDL1 TPSB2 SNORA78 E4F1 LOC101929280 HAGH WFIKKN1 PGP LINC00254 ZNF598 UNKL LINC00235 TPSG1 FAHD1 RGS11 RAB11FIP3 MIR6511B1 NUBP2 GNPTG TELO2 LOC105371047 MRPL28 NHLRC4 LOC652276 SPSB3 LOC100287175 LOC107984876 PDIA2 RPS2 MIR3180-5 LMF1 LOC105371046 LOC105371038 SLC9A3R2 MIR662 DDX11L10
nsv471072 Chr.16:1971892 - 2317508 on Build GRCh38 Loss ABCA3 MIR940 NPW MIR1225 SNHG19 MIR4516 E4F1 TRAF7 CASKIN1 NTHL1 ECI1 SNORD60 TBL3 RNPS1 BRICD5 MLST8 DNASE1L2 PGP ZNF598 TSC2 LOC105371049 MIR6511B1 NOXO1 GFER RAB26 SYNGR3 MIR3677 MIR3180-5 SLC9A3R2 PKD1 LOC106660606 MIR4717
nsv457353 Chr.16:2255538 - 2365929 on Build GRCh38 Loss ABCA3 MIR940 MIR3677 RNPS1 ABCA17P LOC106660606 MIR4717
nsv1052260 Chr.16:2074546 - 2629655 on Build GRCh38 Gain ABCA3 MIR940 MIR3178 C16orf59 MIR1225 SNHG19 MIR4516 E4F1 MIR6768 TRAF7 MIR6767 CASKIN1 CCNF ECI1 SNORD60 RNPS1 BRICD5 NTN3 PDPK1 MLST8 LOC729652 DNASE1L2 PGP TSC2 LOC105371049 MIR6511B1 TBC1D24 ABCA17P RAB26 MIR3677 LOC652276 MIR3180-5 CEMP1 AMDHD2 PKD1 ATP6V0C LOC106660606 MIR4717
nsv952902 Chr.16:2143400 - 2339999 on Build GRCh38 Deletion ABCA3 MIR940 SNHG19 E4F1 TRAF7 RAB26 CASKIN1 ECI1 MIR3677 SNORD60 RNPS1 BRICD5 MLST8 LOC106660606 DNASE1L2 MIR4717 PGP
nsv571202 Chr.16:2278649 - 2289619 on Build GRCh38 Loss ABCA3

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