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See other ABCA3 CNV Assays ›
Gene Symbol
ABCA3
Assay Reference Genome
Location

Chr.16:2287681 on build GRCh38
Cytoband
16p13.3
Assay ID Hs03944084_cn
Size
Availability Made To Order
Catalog # 4400291
Price
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Assay Details

Target Gene Details

Entrez Gene ID:

 21

Gene Name:

 ATP binding cassette subfamily A member 3

Gene Aliases:

 ABC-C, ABC3, EST111653, LBM180, SMDP3

Location:

 Chr.16:2275878-2340746 on Build GRCh38

Assay Gene Location:

 Within Intron 21
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
ABCA3 NM_001089.2 NP_001080.2
AB070929.1 BAB86781.1
AB210044.1 BAE06126.1
BC140895.1
BC146866.1
BC151840.1
U78735.1 AAC50967.1
X97187.1 CAA65825.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
esv2422427 Chr.16:10001 - 2723164 on Build GRCh38 Duplication NPRL3 ZNF598 NARFL NUBP2 TELO2 ARHGDIG ECI1 MIR6768 PRSS29P ATP6V0C FAM173A MIR4717 LOC652276 MIR6859-4 TBL3 MIR3677 UNKL MIR3178 MSLN NME3 LOC106660606 CHTF18 AXIN1 CACNA1H LMF1 LOC105371047 CEMP1 SNRNP25 TBC1D24 MIR6767 MIR4516 UBE2I CASKIN1 RPS2 RAB26 CLCN7 LINC00235 HAGH ABCA17P IFT140 CCDC78 LOC100287175 FAM234A CRAMP1 PTX4 LOC105371046 NME4 CAPN15 MRPL28 LOC100134368 TPSG1 PRSS27 NOXO1 PRR35 RHOT2 LUC7L CCDC154 PRR25 TPSD1 HBA2 PKD1 MCRIP2 TPSB2 MIR6511B1 AMDHD2 LOC729652 HBM MIR5587 PIGQ RAB11FIP3 HBZ SPSB3 MIR1225 MIR662 FLJ42627 SNORA10 FAHD1 NPW MIR3176 SNORD60 TMEM204 MAPK8IP3 E4F1 SNHG19 C16orf91 MRPS34 METRN RPL23AP5 SLC9A3R2 HAGHL RPUSD1 WASIR2 MIR940 PDIA2 RNF151 SYNGR3 RAB40C NTN3 SNHG9 EME2 FBXL16 LOC105371184 GNG13 RNPS1 NTHL1 LOC105371038 DDX11L10 SOX8 BRICD5 IGFALS PGP TSR3 POLR3K SSTR5-AS1 MSRB1 LOC105371045 TMEM8A DECR2 WDR24 JMJD8 NDUFB10 MPG TRAF7 RGS11 GFER RPL3L LINC00254 C16orf59 LMF1-AS1 HS3ST6 SNORA78 MEIOB DNASE1L2 LOC101929280 NHLRC4 LOC107987233 RHBDF1 MLST8 RHBDL1 CCNF HN1L BAIAP3 KCTD5 LOC105371049 WDR90 PDPK1 ERVK13-1 SSTR5 MIR3177 LOC107984876 GNPTG MIR3180-5 C1QTNF8 HBQ1 TSC2 TPSAB1 SNORA64 ABCA3 HBA1 WFIKKN1 METTL26 STUB1
nsv471072 Chr.16:1971892 - 2317508 on Build GRCh38 Loss ZNF598 TRAF7 GFER ECI1 SLC9A3R2 MIR4717 MIR940 TBL3 MIR3677 SYNGR3 DNASE1L2 NOXO1 LOC106660606 MLST8 RNPS1 PKD1 NTHL1 MIR6511B1 BRICD5 PGP LOC105371049 MIR4516 MIR3180-5 MIR1225 CASKIN1 RAB26 NPW SNORD60 TSC2 ABCA3 E4F1 SNHG19
nsv571201 Chr.16:2255538 - 2365929 on Build GRCh38 Loss ABCA17P RNPS1 MIR940 MIR3677 ABCA3 LOC106660606 MIR4717
nsv1052260 Chr.16:2074546 - 2629655 on Build GRCh38 Gain ABCA17P TRAF7 ECI1 MIR6768 ATP6V0C C16orf59 MIR4717 LOC652276 MIR940 MIR3677 MIR3178 NTN3 DNASE1L2 LOC106660606 MLST8 RNPS1 PKD1 CCNF MIR6511B1 AMDHD2 BRICD5 LOC729652 PGP CEMP1 TBC1D24 LOC105371049 MIR6767 PDPK1 MIR4516 MIR3180-5 MIR1225 CASKIN1 RAB26 SNORD60 TSC2 ABCA3 E4F1 SNHG19
nsv952902 Chr.16:2143400 - 2339999 on Build GRCh38 Deletion RNPS1 TRAF7 BRICD5 PGP ECI1 MIR4717 MIR940 CASKIN1 MIR3677 RAB26 SNORD60 DNASE1L2 ABCA3 E4F1 LOC106660606 SNHG19 MLST8
nsv571202 Chr.16:2278649 - 2289619 on Build GRCh38 Loss ABCA3

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