Hs03944822_cn

• Gene Symbol: NAGPA-AS1
• Assay Reference Genome Location: Chr.16:5040850 on build GRCh38
• Cytoband: 16p13.3

Target Gene Details

• Entrez Gene ID: 100507589
• Gene Name: NAGPA antisense RNA 1
• Gene Aliases: -
• Location: Chr.16:5033702-5042971 on Build GRCh38
• Assay Gene Location: Within Intron 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
NAGPA-AS1	NR_038913.1
	AK055222.1

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
nsv1722	Chr.16:5031097 - 5075947 on Build GRCh38	Deletion	NAGPA C16orf89 NAGPA-AS1 ALG1
nsv1042612	Chr.16:4965694 - 5150514 on Build GRCh38	Loss	NAGPA C16orf89 NAGPA-AS1 ALG1 EEF2KMT SEC14L5
esv3892762	Chr.16:4967386 - 5060625 on Build GRCh38	Gain	NAGPA C16orf89 NAGPA-AS1 SEC14L5
nsv428318	Chr.16:5011594 - 5374828 on Build GRCh38	Gain	NAGPA RBFOX1 C16orf89 NAGPA-AS1 ALG1 EEF2KMT SEC14L5
esv25186	Chr.16:4858500 - 5142800 on Build GRCh38	Gain	NAGPA PPL UBN1 C16orf89 NAGPA-AS1 ALG1 EEF2KMT SEC14L5
esv3637713	Chr.16:4957958 - 5307305 on Build GRCh38	Gain	NAGPA RBFOX1 C16orf89 NAGPA-AS1 ALG1 EEF2KMT SEC14L5
esv3637714	Chr.16:4958035 - 5079276 on Build GRCh38	Gain	NAGPA C16orf89 NAGPA-AS1 ALG1 SEC14L5
esv2422516	Chr.16:4775920 - 5160979 on Build GRCh38	Deletion	NAGPA PPL UBN1 SEPT12 C16orf89 NAGPA-AS1 SMIM22 ROGDI GLYR1 ALG1 EEF2KMT SEC14L5
nsv1046986	Chr.16:4049000 - 5555721 on Build GRCh38	Gain	C16orf96 SEPT12 C16orf89 HMOX2 NMRAL1 CORO7 CORO7-PAM16 GLIS2 UBN1 ANKS3 CDIP1 C16orf71 GLYR1 EEF2KMT TFAP4 VASN UBALD1 NAGPA GLIS2-AS1 RBFOX1 NUDT16L1 LOC105371063 MIR6769A SMIM22 ADCY9 ROGDI PAM16 ALG1 LINC01569 SEC14L5 PPL NAGPA-AS1 MGRN1 SRL DNAJA3 ZNF500
esv34300	Chr.16:5005938 - 5322534 on Build GRCh38	Gain	NAGPA RBFOX1 C16orf89 NAGPA-AS1 ALG1 EEF2KMT SEC14L5
nsv1038475	Chr.16:5004985 - 5310633 on Build GRCh38	Gain	NAGPA RBFOX1 C16orf89 NAGPA-AS1 ALG1 EEF2KMT SEC14L5
esv2760069	Chr.16:4922849 - 5374828 on Build GRCh38	Gain+Loss	NAGPA PPL RBFOX1 C16orf89 NAGPA-AS1 ALG1 EEF2KMT SEC14L5
nsv571303	Chr.16:4960912 - 5284683 on Build GRCh38	Loss	NAGPA RBFOX1 C16orf89 NAGPA-AS1 ALG1 EEF2KMT SEC14L5
nsv817715	Chr.16:5006294 - 5309352 on Build GRCh38	Gain	NAGPA RBFOX1 C16orf89 NAGPA-AS1 ALG1 EEF2KMT SEC14L5
nsv1039432	Chr.16:5013335 - 5074451 on Build GRCh38	Loss	NAGPA C16orf89 NAGPA-AS1 ALG1 SEC14L5

More Information

Additional Information:

For this assay, SNP(s) [rs79088536] are located under a primer or probe sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.

• Set Membership: Intragenic, Intronic, Non-exonic, DGV Variation