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See other AXIN1 CNV Assays ›
Gene Symbol
AXIN1
Assay Reference Genome
Location

Chr.16:292748 on build GRCh38
Cytoband
16p13.3
Assay ID Hs03945241_cn
Size
Availability Made To Order
Catalog # 4400291
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Assay Details

Target Gene Details

Entrez Gene ID:

 8312

Gene Name:

 axin 1

Gene Aliases:

 AXIN, PPP1R49

Location:

 Chr.16:287440-355226 on Build GRCh38

Assay Gene Location:

 Within Intron 14
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
AXIN1 NM_003502.3 NP_003493.1
NM_181050.2 NP_851393.1
NR_134879.1
XM_011522682.2 XP_011520984.1
XM_011522683.2 XP_011520985.1
XM_011522684.2 XP_011520986.1
XM_011522686.1 XP_011520988.1
XM_017023743.1 XP_016879232.1
XM_017023744.1 XP_016879233.1
XM_017023745.1 XP_016879234.1
XM_017023746.1 XP_016879235.1
AB208876.1 7 2223 BAD92113.1
AF009674.1 AAC51624.1
BC017447.1 AAH17447.1
BC044648.1 AAH44648.1
KF615847.1
KF615848.1
KF615849.1
KF615850.1
KF615851.1
KF615852.1
KF615853.1
KF615854.1
KU178413.1
KU178414.1
KU178415.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
esv2422427 Chr.16:10001 - 2723164 on Build GRCh38 Duplication LOC105371045 RNF151 NPW PIGQ MIR6768 PRSS29P HBA2 UBE2I LOC100287175 ABCA3 FAM234A RPL23AP5 HN1L MCRIP2 NARFL STUB1 GNG13 RAB40C CRAMP1 CLCN7 PKD1 MRPL28 SPSB3 TRAF7 LOC105371047 WFIKKN1 NME3 AXIN1 FBXL16 JMJD8 IGFALS LOC101929280 MSLN LINC00235 SLC9A3R2 PDPK1 ATP6V0C TBC1D24 ERVK13-1 HBA1 CCNF LOC106660606 MIR3677 METRN E4F1 RHBDF1 HS3ST6 RPL3L LMF1-AS1 TPSG1 FAM173A NME4 RAB11FIP3 C16orf59 TPSB2 RGS11 CCDC154 DDX11L10 BAIAP3 MIR662 PDIA2 SNRNP25 HBQ1 SSTR5-AS1 SNHG9 SNORD60 HAGH BRICD5 MSRB1 MIR3180-5 MIR6511B1 TMEM8A DNASE1L2 NDUFB10 GNPTG KCTD5 SNHG19 C16orf91 MEIOB SNORA10 EME2 FLJ42627 LUC7L GFER PRSS27 LOC652276 CCDC78 LOC105371049 MIR3177 TSR3 RAB26 MIR940 TPSAB1 CACNA1H LOC729652 MIR1225 SSTR5 NUBP2 NOXO1 RHOT2 TMEM204 NPRL3 MIR6767 RPUSD1 LOC100134368 IFT140 LOC105371038 MIR6859-4 MIR3178 FAHD1 CHTF18 CEMP1 HBM PRR35 DECR2 UNKL SOX8 POLR3K MPG MIR5587 LOC107984876 TELO2 PGP MIR3176 NTHL1 HAGHL WDR24 NTN3 SNORA64 SNORA78 NHLRC4 RHBDL1 ARHGDIG WDR90 HBZ PRR25 TBL3 PTX4 ABCA17P MRPS34 LOC107987233 ECI1 ZNF598 METTL26 MLST8 TSC2 RNPS1 CASKIN1 MAPK8IP3 LOC105371184 LOC105371046 SYNGR3 AMDHD2 MIR4717 WASIR2 MIR4516 C1QTNF8 RPS2 LMF1 LINC00254 TPSD1 CAPN15
esv3637564 Chr.16:287941 - 370218 on Build GRCh38 Gain AXIN1 MRPL28
nsv952896 Chr.16:273501 - 321500 on Build GRCh38 Deletion AXIN1 RGS11 PDIA2 ARHGDIG
esv3637563 Chr.16:263248 - 505590 on Build GRCh38 Gain AXIN1 TMEM8A MRPL28 DECR2 RGS11 LOC100134368 FAM234A RPL23AP5 PDIA2 NME4 ARHGDIG RAB11FIP3
nsv570951 Chr.16:279671 - 322597 on Build GRCh38 Loss AXIN1 PDIA2 ARHGDIG
nsv827477 Chr.16:262247 - 297639 on Build GRCh38 Gain AXIN1 RGS11 FAM234A PDIA2 ARHGDIG
nsv570947 Chr.16:272935 - 297326 on Build GRCh38 Loss AXIN1 RGS11 PDIA2 ARHGDIG
dgv32n68 Chr.16:245507 - 476226 on Build GRCh38 Loss AXIN1 TMEM8A MRPL28 DECR2 RGS11 LOC100134368 FAM234A RPL23AP5 PDIA2 NME4 ARHGDIG RAB11FIP3

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More Information


Additional Information:

For this assay, SNP(s) [rs77405410] are located under a primer or probe sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.

Set Membership:

 Intragenic Intronic Non-exonic DGV Variation

Panther Classification:

Molecular Function -

scaffold/adaptor protein

Gene Ontology Categories:

Function(s) Process(es)


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