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See other ABCA3 CNV Assays ›
Gene Symbol
ABCA3
Assay Reference Genome
Location

Chr.16:2282521 on build GRCh38
Cytoband
16p13.3
Assay ID Hs03946505_cn
Size
Availability Made To Order
Catalog # 4400291
Price
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Assay Details

Target Gene Details

Entrez Gene ID:

 21

Gene Name:

 ATP binding cassette subfamily A member 3

Gene Aliases:

 ABC-C, ABC3, EST111653, LBM180, SMDP3

Location:

 Chr.16:2275878-2340746 on Build GRCh38

Assay Gene Location:

 Within Intron 26
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
ABCA3 NM_001089.2 NP_001080.2
AB070929.1 BAB86781.1
AB210044.1 BAE06126.1
BC140895.1
BC146866.1
BC151840.1
U78735.1 AAC50967.1
X97187.1 CAA65825.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
esv2422427 Chr.16:10001 - 2723164 on Build GRCh38 Duplication WDR24 MRPL28 SNORD60 FAHD1 LOC105371045 TELO2 MIR6768 RHBDF1 HBZ TMEM8A LMF1-AS1 MRPS34 RAB26 LOC105371038 RNPS1 ABCA3 MIR662 CCDC78 TPSG1 ARHGDIG C16orf91 FAM173A HAGH PRR25 SNORA64 RPL3L SPSB3 MIR5587 WDR90 CHTF18 C1QTNF8 RPS2 LOC105371049 PRR35 SSTR5 RPUSD1 BAIAP3 PGP IGFALS MSLN C16orf59 SNRNP25 HBA2 NARFL RGS11 EME2 WASIR2 HS3ST6 MIR3176 CRAMP1 HBM HAGHL NOXO1 NPRL3 STUB1 KCTD5 PIGQ FAM234A SYNGR3 NTHL1 TPSAB1 GNG13 LINC00235 MIR3178 TMEM204 FLJ42627 NUBP2 DECR2 PTX4 BRICD5 LOC107984876 MIR1225 TSR3 JMJD8 LOC652276 LUC7L CCNF MIR940 MIR3180-5 LOC105371046 HBQ1 TPSB2 MIR4516 MIR6511B1 RAB40C AXIN1 CAPN15 LINC00254 METTL26 NME3 RAB11FIP3 MEIOB TPSD1 NPW MIR6859-4 TSC2 LOC100134368 AMDHD2 HN1L CEMP1 METRN SLC9A3R2 POLR3K ABCA17P PKD1 PRSS29P SNHG19 HBA1 DDX11L10 PRSS27 CASKIN1 ZNF598 FBXL16 LOC105371047 MIR3677 LMF1 DNASE1L2 RHOT2 MCRIP2 MPG LOC729652 GFER LOC101929280 NTN3 MSRB1 LOC106660606 SSTR5-AS1 ECI1 PDPK1 MIR6767 LOC107987233 SNHG9 LOC100287175 ATP6V0C TBL3 GNPTG MAPK8IP3 ERVK13-1 NDUFB10 WFIKKN1 CCDC154 SNORA78 SNORA10 CLCN7 CACNA1H PDIA2 E4F1 IFT140 UNKL NME4 NHLRC4 TBC1D24 RNF151 RHBDL1 TRAF7 UBE2I RPL23AP5 LOC105371184 SOX8 MLST8 MIR4717 MIR3177
nsv471072 Chr.16:1971892 - 2317508 on Build GRCh38 Loss PGP GFER SNORD60 LOC106660606 ECI1 NPW TSC2 NOXO1 SYNGR3 TBL3 NTHL1 SLC9A3R2 RAB26 RNPS1 ABCA3 PKD1 BRICD5 MIR1225 SNHG19 E4F1 MIR940 MIR3180-5 CASKIN1 ZNF598 MIR4516 MIR3677 TRAF7 MIR6511B1 LOC105371049 DNASE1L2 MLST8 MIR4717
nsv457353 Chr.16:2255538 - 2365929 on Build GRCh38 Loss MIR3677 MIR940 RNPS1 LOC106660606 ABCA3 MIR4717 ABCA17P
nsv1052260 Chr.16:2074546 - 2629655 on Build GRCh38 Gain PGP C16orf59 LOC729652 SNORD60 NTN3 LOC106660606 MIR6768 ECI1 PDPK1 TSC2 AMDHD2 MIR6767 CEMP1 ATP6V0C RAB26 RNPS1 ABCA3 MIR3178 ABCA17P PKD1 BRICD5 MIR1225 LOC652276 SNHG19 E4F1 CCNF MIR940 MIR3180-5 CASKIN1 MIR4516 TBC1D24 MIR3677 TRAF7 MIR6511B1 LOC105371049 DNASE1L2 MLST8 MIR4717
nsv952902 Chr.16:2143400 - 2339999 on Build GRCh38 Deletion PGP BRICD5 SNORD60 SNHG19 E4F1 MIR940 LOC106660606 ECI1 CASKIN1 MIR3677 TRAF7 DNASE1L2 RAB26 RNPS1 ABCA3 MLST8 MIR4717
nsv571202 Chr.16:2278649 - 2289619 on Build GRCh38 Loss ABCA3

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