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See other FANCA CNV Assays ›
Gene Symbol
FANCA
Assay Reference Genome
Location

Chr.16:89743318 on build GRCh38
Cytoband
16q24.3
Assay ID Hs03949428_cn
Size
Availability Made To Order
Catalog # 4400291
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Assay Details

Target Gene Details

Entrez Gene ID:

 2175

Gene Name:

 Fanconi anemia complementation group A

Gene Aliases:

 FA, FA-H, FA1, FAA, FACA, FAH, FANCH

Location:

 Chr.16:89737551-89816658 on Build GRCh38

Assay Gene Location:

 Within Intron 38
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
FANCA NM_000135.2 NP_000126.2
NM_001286167.1 NP_001273096.1
XM_005256294.4 XP_005256351.1
XM_011522945.2 XP_011521247.1
XM_011522946.2 XP_011521248.1
XM_011522947.2 XP_011521249.1
XM_017023044.1 XP_016878533.1
AK299282.1
AK301168.1
X99226.1 CAA67610.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
nsv1931 Chr.16:89713649 - 89746701 on Build GRCh38 Insertion FANCA ZNF276 VPS9D1 VPS9D1-AS1
nsv573744 Chr.16:89738447 - 89915950 on Build GRCh38 Loss FANCA ZNF276 LOC107984817 LOC105371419 SPIRE2 TCF25
nsv952079 Chr.16:89685593 - 89749492 on Build GRCh38 Deletion FANCA SPATA2L ZNF276 CDK10 VPS9D1 VPS9D1-AS1
nsv573743 Chr.16:89664419 - 89853617 on Build GRCh38 Gain FANCA SPATA2L ZNF276 LOC107984817 SPATA33 LOC105371419 SPIRE2 CDK10 VPS9D1 VPS9D1-AS1
esv2762221 Chr.16:89610380 - 90039318 on Build GRCh38 Gain+Loss SPATA2L ZNF276 DBNDD1 LOC107984817 GAS8 LOC105371419 CDK10 DPEP1 VPS9D1-AS1 CENPBD1 DEF8 MC1R AFG3L1P FANCA SPATA33 SPIRE2 TUBB3 VPS9D1 GAS8-AS1 TCF25 CHMP1A
nsv428331 Chr.16:89216635 - 90185980 on Build GRCh38 Gain+Loss SNORD68 SPG7 LOC105371419 URAHP CENPBD1 PRDM7 DEF8 TUBB8P7 LOC105371414 LOC101927817 SPIRE2 VPS9D1 GAS8-AS1 LOC100287036 CPNE7 ANKRD11 SPATA2L ZNF276 RPL13 DBNDD1 LOC107984817 GAS8 CDK10 DPEP1 VPS9D1-AS1 MC1R AFG3L1P FANCA SPATA33 TUBB3 FAM157C ZNF778 TCF25 CHMP1A
nsv833331 Chr.16:89726091 - 89849806 on Build GRCh38 Gain+Loss FANCA ZNF276 LOC107984817 LOC105371419 SPIRE2
nsv482951 Chr.16:88633593 - 90228345 on Build GRCh38 Loss SNORD68 SPG7 CYBA MVD CBFA2T3 CTU2 LOC105371409 DEF8 LOC105371414 IL17C LOC101927817 SPIRE2 RNF166 CPNE7 MIR4722 ZNF276 LOC339059 CDK10 DPEP1 SNAI3-AS1 MC1R FANCA ACSF3 SPATA33 LINC00304 TRAPPC2L CHMP1A LOC105371419 URAHP SLC22A31 LOC107987238 PABPN1L CENPBD1 PRDM7 CDH15 TUBB8P7 VPS9D1 LOC100129697 LOC100289580 GAS8-AS1 LOC101927793 LOC100287036 APRT ANKRD11 SPATA2L RPL13 DBNDD1 LOC107984817 SNAI3 GAS8 VPS9D1-AS1 AFG3L1P CDT1 LOC400558 TUBB3 FAM157C ZNF778 TCF25 GALNS PIEZO1
nsv509639 Chr.16:89513538 - 89775915 on Build GRCh38 Insertion SNORD68 SPATA2L ZNF276 RPL13 SPG7 CDK10 DPEP1 VPS9D1-AS1 FANCA SPATA33 VPS9D1 CPNE7 CHMP1A

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