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See other FANCA CNV Assays ›
Gene Symbol
FANCA
Assay Reference Genome
Location

Chr.16:89743318 on build GRCh38
Cytoband
16q24.3
Assay ID Hs03949428_cn
Size
Availability Made To Order
Catalog # 4400291
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Assay Details

Target Gene Details

Entrez Gene ID:

 2175

Gene Name:

 Fanconi anemia complementation group A

Gene Aliases:

 FA, FA-H, FA1, FAA, FACA, FAH, FANCH

Location:

 Chr.16:89737551-89816658 on Build GRCh38

Assay Gene Location:

 Within Intron 38
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
FANCA NM_000135.2 NP_000126.2
NM_001286167.1 NP_001273096.1
XM_005256294.4 XP_005256351.1
XM_011522945.2 XP_011521247.1
XM_011522946.2 XP_011521248.1
XM_011522947.2 XP_011521249.1
XM_017023044.1 XP_016878533.1
AK299282.1
AK301168.1
X99226.1 CAA67610.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
nsv1931 Chr.16:89713649 - 89746701 on Build GRCh38 Insertion FANCA VPS9D1-AS1 ZNF276 VPS9D1
nsv457624 Chr.16:89738447 - 89915950 on Build GRCh38 Loss FANCA LOC105371419 LOC107984817 TCF25 ZNF276 SPIRE2
nsv952079 Chr.16:89685593 - 89749492 on Build GRCh38 Deletion FANCA VPS9D1-AS1 CDK10 SPATA2L ZNF276 VPS9D1
esv2762221 Chr.16:89610380 - 90039318 on Build GRCh38 Gain+Loss TUBB3 FANCA VPS9D1-AS1 CDK10 CENPBD1 SPATA33 DPEP1 GAS8 DBNDD1 LOC107984817 TCF25 MC1R ZNF276 VPS9D1 DEF8 AFG3L1P LOC105371419 GAS8-AS1 SPATA2L CHMP1A SPIRE2
nsv457623 Chr.16:89664419 - 89853617 on Build GRCh38 Gain FANCA VPS9D1-AS1 LOC105371419 CDK10 SPATA33 SPATA2L LOC107984817 ZNF276 VPS9D1 SPIRE2
nsv428331 Chr.16:89216635 - 90185980 on Build GRCh38 Gain+Loss CPNE7 TUBB3 LOC105371414 VPS9D1-AS1 CDK10 SPG7 FAM157C LOC101927817 MC1R PRDM7 ZNF276 VPS9D1 GAS8-AS1 SPATA2L RPL13 SPIRE2 FANCA CENPBD1 SPATA33 DPEP1 SNORD68 GAS8 DBNDD1 LOC107984817 TCF25 URAHP ANKRD11 TUBB8P7 DEF8 AFG3L1P LOC105371419 ZNF778 LOC100287036 CHMP1A
nsv833331 Chr.16:89726091 - 89849806 on Build GRCh38 Gain+Loss FANCA LOC105371419 LOC107984817 ZNF276 SPIRE2
nsv482951 Chr.16:88633593 - 90228345 on Build GRCh38 Loss TUBB3 LOC105371414 APRT VPS9D1-AS1 SPG7 PIEZO1 MC1R PRDM7 CBFA2T3 CYBA GAS8-AS1 LOC400558 SPATA2L RPL13 SPIRE2 RNF166 FANCA TRAPPC2L CENPBD1 LOC107987238 SNORD68 CDH15 CTU2 TCF25 TUBB8P7 AFG3L1P ACSF3 SNAI3 LOC100287036 MIR4722 LOC100289580 PABPN1L CPNE7 CDK10 LOC100129697 GALNS FAM157C LOC101927817 LOC101927793 ZNF276 VPS9D1 LOC339059 SLC22A31 IL17C MVD SPATA33 DPEP1 GAS8 DBNDD1 LOC107984817 SNAI3-AS1 CDT1 URAHP ANKRD11 DEF8 LOC105371419 ZNF778 LINC00304 CHMP1A LOC105371409
nsv509639 Chr.16:89513538 - 89775915 on Build GRCh38 Insertion CPNE7 FANCA VPS9D1-AS1 CDK10 SPG7 SPATA33 DPEP1 SNORD68 ZNF276 VPS9D1 SPATA2L CHMP1A RPL13

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