Hs03951681_cn

• Gene Symbol: CRAMP1
• Assay Reference Genome Location: Chr.16:1636675 on build GRCh38
• Cytoband: 16p13.3

Target Gene Details

• Entrez Gene ID: 57585
• Gene Name: cramped chromatin regulator homolog 1
• Gene Aliases: CRAMP1L, HN1L, TCE4
• Location: Chr.16:1614640-1677908 on Build GRCh38
• Assay Gene Location: Within Intron 3

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
CRAMP1	NM_020825.3			NP_065876.3
	AB037847.2			BAA92664.2
	BC137172.1
	BC137173.1
	BC152477.1
	BE048705.1

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
dgv4856n54	Chr.16:1600945 - 1813519 on Build GRCh38	Loss	MRPS34 MAPK8IP3 LOC105371046 MIR3177 SPSB3 EME2 CRAMP1 NUBP2 IFT140 NME3 IGFALS HAGH HN1L
esv2422427	Chr.16:10001 - 2723164 on Build GRCh38	Duplication	C16orf59 ABCA17P ERVK13-1 MIR3180-5 PRR35 CCDC78 MCRIP2 NPRL3 PDIA2 LOC106660606 TPSAB1 HS3ST6 MPG ARHGDIG TPSG1 MIR6767 ABCA3 MLST8 MIR940 MEIOB MIR1225 ECI1 MIR5587 CASKIN1 HBQ1 LOC105371046 LOC107987233 LOC105371184 GNG13 LMF1-AS1 TMEM204 SOX8 WDR24 LMF1 METTL26 TBL3 NOXO1 TPSD1 SSTR5 HBA2 HAGH PRSS27 TELO2 KCTD5 WFIKKN1 RAB26 SNRNP25 POLR3K NTHL1 HBM TSC2 SSTR5-AS1 MIR3176 FAHD1 CRAMP1 RNPS1 NTN3 SNORA78 RPUSD1 NHLRC4 DDX11L10 MSLN LOC100287175 LOC107984876 GFER SNHG19 TPSB2 CACNA1H HN1L PDPK1 TRAF7 MIR6859-4 MAPK8IP3 WASIR2 FBXL16 HAGHL LINC00254 LINC00235 MIR6768 RPL3L ATP6V0C MIR4516 LOC652276 HBA1 E4F1 LUC7L RHBDL1 IGFALS MIR6511B1 TMEM8A SNORD60 MIR662 SLC9A3R2 GNPTG NARFL NDUFB10 RAB40C MIR3177 RAB11FIP3 MIR4717 LOC100134368 DECR2 LOC101929280 TBC1D24 RPS2 FAM173A IFT140 PKD1 FAM234A LOC729652 MRPS34 PTX4 UNKL MIR3178 UBE2I ZNF598 SPSB3 CCDC154 PRSS29P TSR3 LOC105371049 MIR3677 NME3 SNORA10 CAPN15 SYNGR3 CLCN7 HBZ RHBDF1 FLJ42627 JMJD8 WDR90 RNF151 C1QTNF8 LOC105371045 PIGQ RHOT2 EME2 BRICD5 RPL23AP5 RGS11 LOC105371047 SNORA64 DNASE1L2 METRN AMDHD2 MRPL28 LOC105371038 MSRB1 BAIAP3 PGP CCNF STUB1 AXIN1 SNHG9 CHTF18 NUBP2 C16orf91 NPW CEMP1 NME4 PRR25
nsv1051692	Chr.16:1505070 - 1866102 on Build GRCh38	Loss	TELO2 MRPS34 MAPK8IP3 LOC105371046 TMEM204 MIR3177 SPSB3 FAHD1 EME2 CRAMP1 NUBP2 LOC105371047 IFT140 NME3 IGFALS HAGH HN1L MEIOB
dgv4855n54	Chr.16:1577507 - 1694025 on Build GRCh38	Loss	LOC105371046 IFT140 HN1L CRAMP1
nsv428317	Chr.16:1550716 - 1711581 on Build GRCh38	Gain	MAPK8IP3 LOC105371046 IFT140 TMEM204 HN1L CRAMP1
nsv827496	Chr.16:1589777 - 1638333 on Build GRCh38	Gain	LOC105371046 IFT140 CRAMP1

More Information

Additional Information:

For this assay, SNP(s) [rs79989600] are located under a primer or probe sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.

• Set Membership: Intragenic, Intronic, Non-exonic, DGV Variation

Panther Classification:

Molecular Function -

DNA metabolism protein

Gene Ontology Categories:

Function(s)

DNA binding
chromatin binding