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See other CRAMP1 CNV Assays ›
Gene Symbol
CRAMP1
Assay Reference Genome
Location

Chr.16:1636675 on build GRCh38
Cytoband
16p13.3
Assay ID Hs03951681_cn
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Availability Made To Order
Catalog # 4400291
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Assay Details

Target Gene Details

Entrez Gene ID:

 57585

Gene Name:

 cramped chromatin regulator homolog 1

Gene Aliases:

 CRAMP1L, HN1L, TCE4

Location:

 Chr.16:1614640-1677908 on Build GRCh38

Assay Gene Location:

 Within Intron 3
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
CRAMP1 NM_020825.3 NP_065876.3
AB037847.2 BAA92664.2
BC137172.1
BC137173.1
BC152477.1
BE048705.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
dgv4856n54 Chr.16:1600945 - 1813519 on Build GRCh38 Loss IFT140 MAPK8IP3 HAGH SPSB3 CRAMP1 IGFALS HN1L NME3 MRPS34 EME2 NUBP2 LOC105371046 MIR3177
esv2422427 Chr.16:10001 - 2723164 on Build GRCh38 Duplication LOC101929280 MIR6511B1 NOXO1 WDR24 RPL3L STUB1 ABCA3 SNORD60 CEMP1 SNHG19 METTL26 TELO2 TBC1D24 TRAF7 FBXL16 MRPL28 FAM234A HS3ST6 NARFL SSTR5-AS1 SNHG9 LINC00254 ABCA17P NHLRC4 ARHGDIG DECR2 HBQ1 TMEM204 LOC105371038 CLCN7 LMF1-AS1 PTX4 LINC00235 WASIR2 RNF151 GNPTG EME2 MSLN LMF1 DNASE1L2 FAHD1 LOC100134368 NME4 LUC7L MPG MIR6768 KCTD5 PRR35 C1QTNF8 CHTF18 METRN JMJD8 NTN3 AXIN1 ZNF598 PRR25 TBL3 SNRNP25 RHOT2 CCDC78 PDPK1 PDIA2 SNORA64 PKD1 MEIOB PRSS29P RGS11 TPSG1 RPUSD1 LOC105371049 MLST8 ECI1 MIR6767 TSR3 BRICD5 LOC107987233 IFT140 RPS2 MIR5587 MAPK8IP3 SNORA10 GNG13 NTHL1 CAPN15 PRSS27 UNKL CASKIN1 TMEM8A PIGQ MCRIP2 NME3 AMDHD2 MIR940 WDR90 LOC107984876 RNPS1 FLJ42627 NPW LOC105371045 PGP C16orf59 SSTR5 DDX11L10 HBA1 C16orf91 RAB40C CRAMP1 FAM173A MIR4717 MSRB1 MRPS34 CCDC154 CACNA1H SLC9A3R2 TPSAB1 BAIAP3 RPL23AP5 LOC100287175 MIR3677 LOC106660606 UBE2I TPSB2 NPRL3 ERVK13-1 NDUFB10 HAGH POLR3K MIR1225 SNORA78 MIR3176 E4F1 MIR4516 RAB26 SOX8 HBM LOC105371047 MIR3177 HBA2 SYNGR3 RHBDL1 HAGHL MIR6859-4 TPSD1 MIR3180-5 LOC729652 LOC652276 TSC2 HBZ RHBDF1 SPSB3 CCNF RAB11FIP3 IGFALS ATP6V0C HN1L LOC105371184 GFER MIR3178 NUBP2 LOC105371046 WFIKKN1 MIR662
nsv1051692 Chr.16:1505070 - 1866102 on Build GRCh38 Loss FAHD1 IFT140 MAPK8IP3 HAGH MEIOB TELO2 SPSB3 CRAMP1 IGFALS HN1L NME3 MRPS34 LOC105371047 EME2 NUBP2 LOC105371046 MIR3177 TMEM204
dgv4855n54 Chr.16:1577507 - 1694025 on Build GRCh38 Loss CRAMP1 IFT140 HN1L LOC105371046
nsv833118 Chr.16:1550716 - 1711581 on Build GRCh38 Loss CRAMP1 IFT140 HN1L MAPK8IP3 LOC105371046 TMEM204
nsv827496 Chr.16:1589777 - 1638333 on Build GRCh38 Gain CRAMP1 IFT140 LOC105371046

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More Information


Additional Information:

For this assay, SNP(s) [rs79989600] are located under a primer or probe sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.

Set Membership:

 Intragenic Intronic Non-exonic DGV Variation

Panther Classification:

Molecular Function -

DNA metabolism protein

Gene Ontology Categories:

Process(es)


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