Genomic Map
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Target Gene Details
Entrez Gene ID: | 6360 |
Gene Name: | C-C motif chemokine ligand 16 |
Gene Aliases: |
CKb12, HCC-4, ILINCK, LCC-1, LEC, LMC, Mtn-1, NCC-4, NCC4, SCYA16, SCYL4 |
Location: |
Chr.17:35976493-35983620 on Build GRCh38 |
Assay Gene Location: | Within Intron 3 |
| Gene Symbol | Transcript Accession | Exon Location | Assay Transcript Location | Protein ID |
|---|---|---|---|---|
| CCL16 | NM_004590.3 | NP_004581.1 | ||
| XM_005258020.4 | XP_005258077.1 | |||
| AB007454.1 | BAA24057.1 | |||
| AF039955.1 | AAC97451.1 | |||
| AF055467.1 | AAC28844.1 | |||
| BC099662.3 | AAH99662.1 | |||
| U91746.1 | AAC05587.1 |
Target Copy Number Variation Details
DGV Version: |
Release date: 2016-05-15, GRCh GRCh38 |
| Target Variation |
Location | CNV Subtype |
Genes |
|---|---|---|---|
| nsv1059795 | Chr.17:35828724 - 36157706 on Build GRCh38 | Gain |
 CCL15
CCL4
LRRC37A8P
CCL3
TAF15
CCL14
HEATR9
LOC101927339
CCL15-CCL14
LYZL6
CCL16
RDM1
CCL23
CCL18
CCL5
|
| nsv833427 | Chr.17:35958281 - 36115227 on Build GRCh38 | Loss |
LOC101927339
CCL15-CCL14
CCL15
CCL4
CCL3
CCL14
CCL16
CCL23
CCL18
|
| nsv833424 | Chr.17:35911883 - 36092128 on Build GRCh38 | Gain |
LOC101927339
CCL15-CCL14
CCL15
CCL3
LYZL6
CCL14
CCL16
RDM1
CCL23
CCL18
|
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Additional Information:
For this assay, SNP(s) [rs148111315] are located under a primer or probe sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.
Set Membership: |
Intragenic
Intronic
Non-exonic
DGV Variation
|
Panther Classification:
Gene Ontology Categories:
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