Genomic Map
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Target Gene Details
Entrez Gene ID: | 58506 |
Gene Name: | SR-related CTD associated factor 1 |
Gene Aliases: |
SRA1 |
Location: |
Chr.19:49640483-49658649 on Build GRCh38 |
Assay Gene Location: | Within Exon 9 |
| Gene Symbol | Transcript Accession | Exon Location | Assay Transcript Location | Protein ID |
|---|---|---|---|---|
| SCAF1 | NM_021228.2 | 7 | 1489 | NP_067051.2 |
| XM_005259122.4 | 7 | 1772 | XP_005259179.1 | |
| XM_011527194.2 | 7 | 1414 | XP_011525496.1 | |
| XM_017027083.1 | 4 | 1216 | XP_016882572.1 | |
| AK024444.1 | 7 | 1489 | ||
| BC011662.2 | AAH11662.2 | |||
| BC053992.1 | 6 | 1376 | AAH53992.1 |
Target Copy Number Variation Details
DGV Version: |
Release date: 2016-05-15, GRCh GRCh38 |
| Target Variation |
Location | CNV Subtype |
Genes |
|---|---|---|---|
| nsv469715 | Chr.19:49572544 - 49730286 on Build GRCh38 | Gain+Loss |
 NOSIP
PRR12
PRRG2
CPT1C
ADM5
BCL2L12
IRF3
PRMT1
SCAF1
RRAS
MIR5088
|
| nsv833865 | Chr.19:49572545 - 49730286 on Build GRCh38 | Gain+Loss |
NOSIP
PRR12
PRRG2
CPT1C
ADM5
BCL2L12
IRF3
PRMT1
SCAF1
RRAS
MIR5088
|
| nsv9739 | Chr.19:47901840 - 50143063 on Build GRCh38 | Gain+Loss |
HSD17B14
BSPH1
SNAR-A12
SNAR-A7
LOC105447645
CD37
MIR6798
LHB
SNORD35B
RUVBL2
TEAD2
CABP5
SNAR-A3
AP2A1
SPHK2
SNORD34
GFY
RASIP1
PRR12
ADM5
LIG1
SLC6A16
CGB7
SNAR-G1
MIR6800
FCGRT
PRRG2
ATF5
KDELR1
SNAR-A6
NUCB1-AS1
LOC105372430
LOC101928295
SULT2B1
GRWD1
FAM83E
PTOV1-AS1
HRC
BAX
NUCB1
PRMT1
AKT1S1
LOC100287477
SNAR-B2
CA11
RPL18
GRIN2D
PTH2
SNAR-A8
PPFIA3
RRAS
MIR5088
CGB3
SNAR-A13
MIR4324
SYNGR4
SNORD35A
PLEKHA4
SNAR-C1
MIR6799
LMTK3
FLT3LG
LIN7B
CGB8
CCDC114
SNAR-B1
TBC1D17
PLA2G4C
CARD8-AS1
FUZ
BCL2L12
IRF3
TULP2
SLC17A7
RPS11
MIR4749
IZUMO1
NOSIP
RCN3
SNAR-C2
ELSPBP1
C19orf68
MED25
EMP3
SNAR-A10
VRK3
SNAR-C3
FUT1
CPT1C
SNAR-A5
SNAR-C5
LOC101059948
ZNF114
ALDH16A1
GYS1
SNAR-A9
SPACA4
SNAR-A2
SCAF1
NTN5
NTF4
CGB1
MIR4750
FTL
MAMSTR
C19orf73
CCDC155
SNAR-A14
PTOV1
SIGLEC11
CYTH2
TMEM143
DBP
PIH1D1
SEC1P
CGB2
DHDH
SIGLEC16
PLA2G4C-AS1
ZNF473
FUT2
CARD8
CGB5
FGF21
SNRNP70
IL4I1
FLJ26850
KCNJ14
SNAR-G2
PNKP
SNAR-A1
RPL13A
TSKS
PTOV1-AS2
PPP1R15A
NUP62
SNORD32A
KCNA7
SNORD33
MIR150
SNAR-D
TRPM4
MIR4751
SNAR-A11
SNAR-A4
DKKL1
BCAT2
SNAR-C4
|
| nsv470150 | Chr.19:49618821 - 49856789 on Build GRCh38 | Gain |
TSKS
PTOV1-AS2
PRR12
PTOV1-AS1
ADM5
MIR6799
PRMT1
SCAF1
AP2A1
MIR6800
MED25
CPT1C
FUZ
BCL2L12
IRF3
PTOV1
RRAS
MIR4749
MIR5088
|
| nsv833864 | Chr.19:49551790 - 49733819 on Build GRCh38 | Gain |
NOSIP
PRR12
PRRG2
CPT1C
ADM5
BCL2L12
IRF3
PRMT1
SCAF1
RRAS
MIR5088
|
| nsv953600 | Chr.19:49555044 - 49938043 on Build GRCh38 | Deletion |
NOSIP
PTOV1-AS1
PRMT1
AKT1S1
AP2A1
MED25
CPT1C
IL4I1
RRAS
MIR5088
PNKP
TSKS
PTOV1-AS2
PRR12
NUP62
ADM5
MIR6799
SCAF1
MIR6800
TBC1D17
MIR4750
PRRG2
ATF5
FUZ
BCL2L12
MIR4751
IRF3
PTOV1
MIR4749
|
| nsv579909 | Chr.19:49649784 - 49659652 on Build GRCh38 | Loss |
IRF3
SCAF1
|
| nsv1160655 | Chr.19:49489110 - 49841830 on Build GRCh38 | Deletion |
NOSIP
RCN3
PTOV1-AS1
SNORD35B
PRMT1
AP2A1
MED25
CPT1C
SNORD34
RRAS
MIR5088
RPL13A
TSKS
PRR12
SNORD35A
ADM5
SNORD32A
SNORD33
MIR150
MIR6799
SCAF1
MIR6800
FCGRT
PRRG2
FUZ
BCL2L12
IRF3
RPS11
|
| nsv828578 | Chr.19:49560777 - 49680548 on Build GRCh38 | Loss |
NOSIP
PRR12
PRRG2
BCL2L12
IRF3
PRMT1
SCAF1
RRAS
|
| nsv579908 | Chr.19:49645135 - 49663393 on Build GRCh38 | Loss |
IRF3
SCAF1
|
Back To TopMore Information
Set Membership: |
Intragenic
Exonic
DGV Variation
|
Panther Classification:
Molecular Function -
RNA metabolism protein
RNA processing factor
RNA splicing factor
nucleic acid metabolism protein
Gene Ontology Categories:
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