Genomic Map
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Target Gene Details
Entrez Gene ID: | 58506 |
Gene Name: | SR-related CTD associated factor 1 |
Gene Aliases: |
SRA1 |
Location: |
Chr.19:49640483-49658649 on Build GRCh38 |
Assay Gene Location: | Within Exon 9 |
| Gene Symbol | Transcript Accession | Exon Location | Assay Transcript Location | Protein ID |
|---|---|---|---|---|
| SCAF1 | NM_021228.2 | 7 | 1489 | NP_067051.2 |
| XM_005259122.4 | 7 | 1772 | XP_005259179.1 | |
| XM_011527194.2 | 7 | 1414 | XP_011525496.1 | |
| XM_017027083.1 | 4 | 1216 | XP_016882572.1 | |
| AK024444.1 | 7 | 1489 | ||
| BC011662.2 | AAH11662.2 | |||
| BC053992.1 | 6 | 1376 | AAH53992.1 |
Target Copy Number Variation Details
DGV Version: |
Release date: 2016-05-15, GRCh GRCh38 |
| Target Variation |
Location | CNV Subtype |
Genes |
|---|---|---|---|
| nsv469715 | Chr.19:49572544 - 49730286 on Build GRCh38 | Gain+Loss |
 SCAF1
PRR12
NOSIP
PRMT1
CPT1C
PRRG2
IRF3
MIR5088
ADM5
RRAS
BCL2L12
|
| nsv833865 | Chr.19:49572545 - 49730286 on Build GRCh38 | Gain+Loss |
SCAF1
PRR12
NOSIP
PRMT1
CPT1C
PRRG2
IRF3
MIR5088
ADM5
RRAS
BCL2L12
|
| nsv9739 | Chr.19:47901840 - 50143063 on Build GRCh38 | Gain+Loss |
TSKS
SNAR-A3
SNORD33
FCGRT
LHB
SNAR-A1
RPL18
TMEM143
SNAR-D
PRRG2
MED25
CABP5
RPS11
FUT2
BCAT2
GRWD1
SNAR-A11
SIGLEC11
MIR150
LOC105372430
CA11
LOC100287477
SNAR-A12
CCDC155
GYS1
SNORD35B
SNAR-C4
SLC17A7
PLA2G4C
FUZ
PTOV1-AS2
CPT1C
TRPM4
HSD17B14
CGB2
ALDH16A1
SNAR-C2
SNORD32A
NUP62
LOC105447645
C19orf68
SNAR-B1
RRAS
FTL
CGB5
BCL2L12
LIN7B
MIR6799
BAX
CARD8
AKT1S1
SIGLEC16
SNAR-A10
SNAR-A9
MAMSTR
SNAR-A5
LOC101928295
DHDH
RPL13A
RUVBL2
CGB1
IL4I1
SNAR-A7
SNAR-G1
SNAR-G2
C19orf73
PNKP
SNAR-A14
EMP3
ADM5
SNAR-B2
SPHK2
FUT1
AP2A1
PPFIA3
TULP2
SCAF1
TEAD2
ATF5
SNAR-C3
PIH1D1
DKKL1
CYTH2
MIR4751
GFY
CGB7
PLA2G4C-AS1
RASIP1
CARD8-AS1
SNAR-A13
MIR4324
FAM83E
MIR6800
PRR12
SLC6A16
PLEKHA4
NTF4
RCN3
SNRNP70
DBP
HRC
TBC1D17
PTOV1-AS1
LMTK3
SNAR-A8
CGB8
ELSPBP1
KCNA7
LOC101059948
ZNF473
CCDC114
SNAR-A4
FLT3LG
SPACA4
ZNF114
FGF21
MIR4749
LIG1
KCNJ14
MIR4750
SNAR-C5
SNAR-A2
GRIN2D
IZUMO1
IRF3
MIR6798
MIR5088
FLJ26850
NUCB1
PTOV1
NOSIP
SYNGR4
NUCB1-AS1
SEC1P
SULT2B1
CD37
SNORD35A
PPP1R15A
SNAR-C1
KDELR1
BSPH1
PRMT1
SNORD34
SNAR-A6
VRK3
CGB3
PTH2
NTN5
|
| nsv817854 | Chr.19:49618821 - 49726387 on Build GRCh38 | Gain |
SCAF1
PRR12
PRMT1
CPT1C
IRF3
MIR5088
ADM5
RRAS
BCL2L12
|
| nsv579909 | Chr.19:49649784 - 49659652 on Build GRCh38 | Loss |
SCAF1
IRF3
|
| nsv953600 | Chr.19:49555044 - 49938043 on Build GRCh38 | Deletion |
SCAF1
MIR4749
NUP62
ATF5
MIR4750
TSKS
IRF3
MIR5088
RRAS
BCL2L12
PTOV1
NOSIP
MIR6799
MIR4751
PRRG2
MED25
AKT1S1
MIR6800
PRR12
FUZ
TBC1D17
IL4I1
PTOV1-AS1
PNKP
PTOV1-AS2
PRMT1
CPT1C
ADM5
AP2A1
|
| nsv833864 | Chr.19:49551790 - 49733819 on Build GRCh38 | Gain |
SCAF1
PRR12
NOSIP
PRMT1
CPT1C
PRRG2
IRF3
MIR5088
ADM5
RRAS
BCL2L12
|
| nsv1160655 | Chr.19:49489110 - 49841830 on Build GRCh38 | Deletion |
SCAF1
SNORD32A
TSKS
IRF3
MIR5088
RRAS
SNORD33
FCGRT
BCL2L12
NOSIP
MIR6799
PRRG2
MED25
RPS11
MIR150
SNORD35A
MIR6800
PRR12
SNORD35B
RPL13A
RCN3
FUZ
PTOV1-AS1
PRMT1
CPT1C
SNORD34
ADM5
AP2A1
|
| nsv828578 | Chr.19:49560777 - 49680548 on Build GRCh38 | Loss |
SCAF1
PRR12
NOSIP
PRMT1
PRRG2
IRF3
RRAS
BCL2L12
|
| nsv579908 | Chr.19:49645135 - 49663393 on Build GRCh38 | Loss |
SCAF1
IRF3
|
Back To TopMore Information
Set Membership: |
Intragenic
Exonic
DGV Variation
|
Panther Classification:
Molecular Function -
RNA metabolism protein
RNA processing factor
RNA splicing factor
nucleic acid metabolism protein
Gene Ontology Categories:
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