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See other SCAF1 CNV Assays ›
Gene Symbol
SCAF1
Assay Reference Genome
Location

Chr.19:49647559 on build GRCh38
Cytoband
19q13.33
Assay ID Hs04016981_cn
Size
Availability Made To Order
Catalog # 4400291
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Assay Details

Target Gene Details

Entrez Gene ID:

 58506

Gene Name:

 SR-related CTD associated factor 1

Gene Aliases:

 SRA1

Location:

 Chr.19:49640483-49658649 on Build GRCh38

Assay Gene Location:

 Within Intron 8
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
SCAF1 NM_021228.2 NP_067051.2
XM_005259122.4 XP_005259179.1
XM_011527194.2 XP_011525496.1
XM_017027083.1 XP_016882572.1
AK024444.1
BC011662.2 AAH11662.2
BC053992.1 AAH53992.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
nsv469715 Chr.19:49572544 - 49730286 on Build GRCh38 Gain+Loss BCL2L12 ADM5 NOSIP RRAS PRRG2 PRMT1 IRF3 PRR12 SCAF1 CPT1C MIR5088
nsv833865 Chr.19:49572545 - 49730286 on Build GRCh38 Gain+Loss BCL2L12 ADM5 NOSIP RRAS PRRG2 PRMT1 IRF3 PRR12 SCAF1 CPT1C MIR5088
nsv9739 Chr.19:47901840 - 50143063 on Build GRCh38 Gain+Loss SNORD35A NTN5 DKKL1 CYTH2 IRF3 SNAR-C2 SCAF1 SIGLEC11 MIR6799 FCGRT IL4I1 NTF4 SIGLEC16 SNAR-B2 LIG1 FLJ26850 GFY RPL18 KDELR1 MIR5088 CGB2 ADM5 NOSIP ZNF114 SNAR-A10 BAX GRIN2D SNAR-C4 SNAR-A14 MIR6798 FUT2 SNAR-A11 SNAR-A13 MIR4750 KCNA7 SPACA4 PRRG2 TEAD2 FLT3LG FGF21 PPP1R15A BSPH1 EMP3 LOC101928295 SNAR-A2 SNAR-D PLEKHA4 DHDH ELSPBP1 ALDH16A1 SNAR-A5 LOC105447645 SNAR-A7 LOC105372430 TSKS NUCB1 SNAR-C1 RPS11 SNAR-A9 MED25 RUVBL2 GYS1 SYNGR4 PRR12 MIR150 MIR4751 LOC100287477 C19orf73 BCAT2 NUP62 RASIP1 SNAR-C5 ATF5 SNAR-A3 GRWD1 CGB1 AKT1S1 SPHK2 MIR6800 CGB7 TULP2 CCDC114 LMTK3 SNAR-A8 LOC101059948 C19orf68 CCDC155 FUT1 CGB8 SLC17A7 SNORD33 SNAR-G1 PPFIA3 CA11 MAMSTR HRC LIN7B MIR4749 HSD17B14 CPT1C AP2A1 TRPM4 SNORD35B SNAR-B1 SNAR-A4 SNAR-G2 ZNF473 PIH1D1 CD37 VRK3 RPL13A TBC1D17 PTH2 NUCB1-AS1 PNKP SNAR-A6 TMEM143 FUZ SLC6A16 PTOV1-AS1 MIR4324 PLA2G4C-AS1 SNORD32A SNAR-C3 CARD8 SNRNP70 PLA2G4C KCNJ14 CARD8-AS1 RRAS CGB3 PTOV1 CGB5 FTL RCN3 SNORD34 PTOV1-AS2 SNAR-A1 SULT2B1 LHB PRMT1 IZUMO1 SNAR-A12 CABP5 BCL2L12 SEC1P FAM83E DBP
nsv470150 Chr.19:49618821 - 49856789 on Build GRCh38 Gain AP2A1 MIR6799 MIR6800 PTOV1-AS2 MED25 FUZ PTOV1-AS1 PRMT1 IRF3 PRR12 MIR5088 BCL2L12 ADM5 RRAS PTOV1 MIR4749 SCAF1 CPT1C TSKS
nsv833864 Chr.19:49551790 - 49733819 on Build GRCh38 Gain BCL2L12 ADM5 NOSIP RRAS PRRG2 PRMT1 IRF3 PRR12 SCAF1 CPT1C MIR5088
nsv953600 Chr.19:49555044 - 49938043 on Build GRCh38 Deletion MIR6800 PRRG2 FUZ PTOV1-AS1 IRF3 RRAS PTOV1 MIR4749 SCAF1 CPT1C TSKS AP2A1 MIR6799 PTOV1-AS2 IL4I1 MED25 PRMT1 PRR12 MIR5088 BCL2L12 ADM5 MIR4751 NOSIP TBC1D17 NUP62 PNKP ATF5 AKT1S1 MIR4750
nsv1160655 Chr.19:49489110 - 49841830 on Build GRCh38 Deletion SNORD35A MIR6800 PRRG2 FUZ PTOV1-AS1 IRF3 SNORD32A RRAS SNORD33 RCN3 SCAF1 CPT1C TSKS AP2A1 MIR6799 SNORD34 FCGRT RPS11 SNORD35B MED25 PRMT1 PRR12 MIR150 MIR5088 BCL2L12 ADM5 NOSIP RPL13A
nsv828578 Chr.19:49560777 - 49680548 on Build GRCh38 Loss BCL2L12 NOSIP RRAS PRRG2 PRMT1 IRF3 PRR12 SCAF1
nsv579908 Chr.19:49645135 - 49663393 on Build GRCh38 Loss IRF3 SCAF1

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