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See other SCAF1 CNV Assays ›
Gene Symbol
SCAF1
Assay Reference Genome
Location

Chr.19:49643277 on build GRCh38
Cytoband
19q13.33
Assay ID Hs04018635_cn
Size
Availability Made To Order
Catalog # 4400291
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Assay Details

Target Gene Details

Entrez Gene ID:

 58506

Gene Name:

 SR-related CTD associated factor 1

Gene Aliases:

 SRA1

Location:

 Chr.19:49640483-49658649 on Build GRCh38

Assay Gene Location:

 Within Intron 3
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
SCAF1 NM_021228.2 NP_067051.2
XM_005259122.4 XP_005259179.1
XM_011527194.2 XP_011525496.1
AK024444.1
BC011662.2 AAH11662.2

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
nsv469715 Chr.19:49572544 - 49730286 on Build GRCh38 Gain+Loss NOSIP PRRG2 PRR12 BCL2L12 IRF3 ADM5 SCAF1 RRAS MIR5088 PRMT1 CPT1C
nsv833865 Chr.19:49572545 - 49730286 on Build GRCh38 Gain+Loss NOSIP PRRG2 PRR12 BCL2L12 IRF3 ADM5 SCAF1 RRAS MIR5088 PRMT1 CPT1C
nsv9739 Chr.19:47901840 - 50143063 on Build GRCh38 Gain+Loss ZNF473 BCL2L12 PTH2 MAMSTR RASIP1 CYTH2 LIN7B CA11 CGB1 PLEKHA4 LOC100287477 MIR6799 RPS11 PPFIA3 MIR4749 RUVBL2 SNAR-C5 KCNJ14 RPL18 VRK3 FCGRT EMP3 ADM5 PLA2G4C SNAR-C3 SNAR-A1 NTF4 PRR12 SNAR-A5 PNKP FUT1 CCDC155 SLC17A7 LIG1 FGF21 CCDC114 SNORD34 DHDH MIR150 MIR6798 CARD8 CGB3 RPL13A HRC PIH1D1 MIR6800 IL4I1 LMTK3 FTL SNAR-A11 CD37 SNAR-A13 PRMT1 NOSIP PLA2G4C-AS1 SNAR-A2 SNAR-A10 CGB7 IZUMO1 SNAR-C4 FAM83E NUP62 CGB5 SIGLEC11 FLJ26850 CPT1C SNAR-D GFY TRPM4 PRRG2 NTN5 LOC101928295 PPP1R15A SNAR-A9 GYS1 TSKS SNAR-A7 SNAR-A14 SULT2B1 SCAF1 PTOV1 MIR4750 GRWD1 TMEM143 AP2A1 IRF3 DBP SNORD33 TEAD2 SNAR-B1 ELSPBP1 SEC1P LHB CGB2 SNRNP70 C19orf68 SNAR-G2 KDELR1 RRAS SIGLEC16 FUT2 SNAR-C2 LOC101059948 CGB8 AKT1S1 FLT3LG BAX SNAR-A3 SNAR-A6 BCAT2 SLC6A16 RCN3 CABP5 ATF5 TULP2 ZNF114 NUCB1-AS1 SNAR-G1 PTOV1-AS1 SNORD35B SNAR-A4 KCNA7 SPACA4 NUCB1 SNORD35A PTOV1-AS2 GRIN2D SYNGR4 MIR4324 HSD17B14 CARD8-AS1 MED25 SNAR-A12 MIR4751 LOC105372430 SNAR-C1 C19orf73 SNAR-A8 BSPH1 SPHK2 TBC1D17 SNORD32A DKKL1 ALDH16A1 SNAR-B2 FUZ MIR5088 LOC105447645
nsv470150 Chr.19:49618821 - 49856789 on Build GRCh38 Gain BCL2L12 ADM5 SCAF1 PTOV1 MED25 RRAS PTOV1-AS1 CPT1C MIR6800 PRR12 AP2A1 IRF3 PTOV1-AS2 MIR6799 MIR4749 TSKS FUZ MIR5088 PRMT1
nsv833864 Chr.19:49551790 - 49733819 on Build GRCh38 Gain NOSIP PRRG2 PRR12 BCL2L12 IRF3 ADM5 SCAF1 RRAS MIR5088 PRMT1 CPT1C
nsv953600 Chr.19:49555044 - 49938043 on Build GRCh38 Deletion BCL2L12 SCAF1 PTOV1 MIR4750 PTOV1-AS1 MIR6800 AP2A1 IRF3 PTOV1-AS2 MIR6799 MIR4749 IL4I1 PRMT1 NOSIP ADM5 NUP62 MED25 RRAS MIR4751 CPT1C PRRG2 PRR12 TBC1D17 AKT1S1 PNKP TSKS ATF5 FUZ MIR5088
nsv1160655 Chr.19:49489110 - 49841830 on Build GRCh38 Deletion BCL2L12 SNORD34 SCAF1 MIR150 PTOV1-AS1 SNORD35B RPL13A MIR6800 SNORD35A AP2A1 IRF3 MIR6799 RPS11 SNORD33 PRMT1 NOSIP FCGRT ADM5 MED25 RRAS CPT1C PRRG2 PRR12 SNORD32A RCN3 TSKS FUZ MIR5088
nsv828578 Chr.19:49560777 - 49680548 on Build GRCh38 Loss NOSIP PRRG2 PRR12 BCL2L12 IRF3 SCAF1 RRAS PRMT1

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