Genomic Map
Back To TopAssay Details
Target Gene Details
Entrez Gene ID: | 3978 |
Gene Name: | DNA ligase 1 |
Gene Aliases: |
- |
Location: |
Chr.19:48115445-48170603 on Build GRCh38 |
Assay Gene Location: | Within Intron 13 |
| Gene Symbol | Transcript Accession | Exon Location | Assay Transcript Location | Protein ID |
|---|---|---|---|---|
| LIG1 | NM_000234.2 | NP_000225.1 | ||
| NM_001289063.1 | NP_001275992.1 | |||
| NM_001289064.1 | NP_001275993.1 | |||
| NM_001320970.1 | NP_001307899.1 | |||
| NM_001320971.1 | NP_001307900.1 | |||
| NR_110296.1 | ||||
| NR_135497.1 | ||||
| NR_135498.1 | ||||
| NR_135499.1 | ||||
| NR_135500.1 | ||||
| NR_135501.1 | ||||
| XM_017026809.1 | XP_016882298.1 | |||
| AB208791.1 | BAD92028.1 | |||
| AK225863.1 | ||||
| AK297296.1 | ||||
| AK300370.1 | ||||
| AK300607.1 | ||||
| AK303644.1 | ||||
| AK314210.1 | ||||
| BC108318.1 | AAI08319.1 | |||
| BC110622.2 | AAI10623.1 | |||
| M36067.1 | AAA59518.1 |
Target Copy Number Variation Details
DGV Version: |
Release date: 2016-05-15, GRCh GRCh38 |
| Target Variation |
Location | CNV Subtype |
Genes |
|---|---|---|---|
| nsv833853 | Chr.19:47982539 - 48184317 on Build GRCh38 | Loss |
 CABP5
PLA2G4C
C19orf68
BSPH1
ELSPBP1
LIG1
PLA2G4C-AS1
|
| nsv9739 | Chr.19:47901840 - 50143063 on Build GRCh38 | Gain+Loss |
SNAR-A3
DHDH
SIGLEC16
MIR5088
IZUMO1
GFY
LOC105447645
TMEM143
CCDC155
MIR150
TBC1D17
MAMSTR
SNAR-D
SPHK2
SNAR-C5
SNAR-A14
CGB7
GRWD1
TULP2
CABP5
PTOV1
SNAR-C2
AKT1S1
C19orf73
FUT2
CPT1C
MIR4324
SNAR-C1
CD37
SNAR-A10
RRAS
MIR6798
DKKL1
MIR6800
NUCB1-AS1
ALDH16A1
CARD8
FTL
SNAR-A12
TEAD2
SNORD33
ATF5
SNAR-G1
LIN7B
PLA2G4C
GRIN2D
LHB
LOC105372430
LOC101059948
FLJ26850
RPL13A
GYS1
TSKS
CGB1
SNAR-A7
ZNF473
SNAR-A11
SNORD32A
PTH2
LOC100287477
CYTH2
PTOV1-AS2
LIG1
VRK3
NUCB1
RASIP1
SYNGR4
PTOV1-AS1
NTF4
CGB3
ELSPBP1
NUP62
SNORD35B
SNAR-A5
FGF21
BCAT2
BSPH1
BAX
SNORD34
SEC1P
IL4I1
MED25
RUVBL2
CA11
SLC6A16
PPFIA3
FLT3LG
SULT2B1
SNAR-B1
SNAR-A2
RPL18
BCL2L12
SNAR-B2
NOSIP
ZNF114
SNAR-C4
FCGRT
CARD8-AS1
SNAR-G2
SNAR-A8
SNORD35A
HRC
KCNA7
HSD17B14
SPACA4
MIR4751
LMTK3
SNAR-C3
SLC17A7
TRPM4
SIGLEC11
PRR12
FUZ
PLA2G4C-AS1
PRMT1
DBP
RCN3
SNAR-A13
PLEKHA4
FAM83E
MIR4750
SCAF1
KDELR1
SNRNP70
SNAR-A6
IRF3
CGB8
NTN5
PPP1R15A
MIR6799
CCDC114
LOC101928295
C19orf68
FUT1
EMP3
SNAR-A1
PRRG2
SNAR-A9
ADM5
CGB5
CGB2
AP2A1
KCNJ14
SNAR-A4
RPS11
PIH1D1
PNKP
MIR4749
|
| esv34181 | Chr.19:48009377 - 48416682 on Build GRCh38 | Loss |
CABP5
PLA2G4C
CCDC114
GRIN2D
C19orf68
EMP3
ZNF114
LIG1
PLA2G4C-AS1
CARD8-AS1
SYNGR4
TMEM143
KDELR1
ELSPBP1
CARD8
|
Back To TopMore Information
Set Membership: |
Intragenic
Intronic
Non-exonic
DGV Variation
|
Panther Classification:
Gene Ontology Categories:
Back To Top