Hs04020797_cn

• Gene Symbol: NFIC
• Assay Reference Genome Location: Chr.19:3361047 on build GRCh38
• Cytoband: 19p13.3

Target Gene Details

• Entrez Gene ID: 4782
• Gene Name: nuclear factor I C
• Gene Aliases: CTF, CTF5, NF-I, NFI
• Location: Chr.19:3359563-3469217 on Build GRCh38
• Assay Gene Location: Within Intron 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
NFIC	NM_001245005.1			NP_001231934.1
	NM_205843.2			NP_995315.1
	XM_006722759.2			XP_006722822.2
	XM_017026836.1			XP_016882325.1
	AK289885.1
	AK304816.1
	BP279194.1
	BQ894051.1
	X12492.1			CAA31012.1

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
nsv509717	Chr.19:3271020 - 3392050 on Build GRCh38	Insertion	CELF5 NFIC
nsv1058546	Chr.19:3321667 - 3369170 on Build GRCh38	Gain	NFIC
nsv953948	Chr.19:3171703 - 3700002 on Build GRCh38	Deletion	CACTIN-AS1 MFSD12 SMIM24 FZR1 HMG20B C19orf71 NFIC CACTIN DOHH NCLN TBXA2R PIP5K1C CELF5 GIPC3 S1PR4
nsv833712	Chr.19:3230782 - 3365290 on Build GRCh38	Loss	CELF5 NFIC

More Information

Additional Information:

For this assay, SNP(s) [rs73919113] are located under a primer or probe sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.

• Set Membership: Intragenic, Intronic, Non-exonic, DGV Variation

Panther Classification:

Molecular Function -

DNA-binding transcription factor

Gene Ontology Categories:

Process(es)

negative regulation of transcription from RNA polymerase II promoter
DNA replication
transcription from RNA polymerase II promoter
odontogenesis of dentin-containing tooth
positive regulation of transcription from RNA polymerase II promoter

Function(s)

RNA polymerase II core promoter proximal region sequence-specific DNA binding
transcriptional activator activity, RNA polymerase II core promoter proximal region sequence-specific binding
transcription factor activity, sequence-specific DNA binding