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See other POLR2E CNV Assays ›
Gene Symbol
POLR2E
Assay Reference Genome
Location

Chr.19:1089137 on build GRCh38
Cytoband
19p13.3
Assay ID Hs04021477_cn
Size
Availability Made To Order
Catalog # 4400291
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Assay Details

Target Gene Details

Entrez Gene ID:

 5434

Gene Name:

 RNA polymerase II subunit E

Gene Aliases:

 RPABC1, RPB5, XAP4, hRPB25, hsRPB5

Location:

 Chr.19:1086579-1095392 on Build GRCh38

Assay Gene Location:

 Within Intron 8
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
POLR2E NM_001316323.1 NP_001303252.1
NM_001316324.1 NP_001303253.1
NM_002695.3 NP_002686.2
XM_011528070.2 XP_011526372.1
XM_017026883.1 XP_016882372.1
AK122813.1
AK295975.1
BC004441.1 AAH04441.1
BC034144.1 AAH34144.1
D38251.1 BAA07406.1
DC351659.1
J04965.1 AAA62401.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
nsv1058677 Chr.19:1054061 - 1283189 on Build GRCh38 Loss ARHGAP45 STK11 ABCA7 LOC102725180 CBARP CIRBP-AS1 ATP5D MIDN C19orf24 GPX4 EFNA2 POLR2E CIRBP SBNO2
nsv9662 Chr.19:893394 - 1317740 on Build GRCh38 Gain CNN2 GRIN3B ARHGAP45 STK11 ABCA7 LOC102725180 RNU6-2 CBARP LOC105372235 CIRBP-AS1 R3HDM4 ATP5D TMEM259 RNU6-9 WDR18 KISS1R MIDN C19orf24 GPX4 EFNA2 POLR2E CIRBP ARID3A SBNO2
dgv136n111 Chr.19:1038223 - 1329640 on Build GRCh38 Deletion CNN2 ARHGAP45 STK11 ABCA7 LOC102725180 CBARP CIRBP-AS1 ATP5D MIDN C19orf24 GPX4 EFNA2 POLR2E CIRBP SBNO2
nsv1160555 Chr.19:887275 - 1346084 on Build GRCh38 Deletion ARHGAP45 ABCA7 LOC102725180 LOC105372235 CIRBP-AS1 ATP5D RNU6-9 MED16 GPX4 POLR2E CIRBP SBNO2 CNN2 GRIN3B STK11 RNU6-2 CBARP R3HDM4 TMEM259 WDR18 KISS1R MIDN C19orf24 EFNA2 ARID3A
nsv470102 Chr.19:1046521 - 1152656 on Build GRCh38 Loss ARHGAP45 ABCA7 GPX4 POLR2E SBNO2
nsv469845 Chr.19:951640 - 1144486 on Build GRCh38 Loss CNN2 TMEM259 GRIN3B WDR18 ARHGAP45 ABCA7 GPX4 POLR2E RNU6-2 LOC105372235 ARID3A SBNO2
nsv833704 Chr.19:951641 - 1144486 on Build GRCh38 Gain CNN2 TMEM259 GRIN3B WDR18 ARHGAP45 ABCA7 GPX4 POLR2E RNU6-2 LOC105372235 ARID3A SBNO2
nsv470103 Chr.19:1086044 - 1325151 on Build GRCh38 Gain ARHGAP45 STK11 LOC102725180 CBARP CIRBP-AS1 ATP5D MIDN C19orf24 GPX4 EFNA2 POLR2E CIRBP SBNO2
nsv953938 Chr.19:355801 - 1104501 on Build GRCh38 Deletion POLRMT LOC101928450 ARHGAP45 ELANE ABCA7 RNF126 LOC105372235 RNU6-9 MED16 CFD GPX4 MADCAM1 SHC2 TPGS1 HCN2 POLR2E MIR3187 CNN2 GRIN3B PLPPR3 C2CD4C FGF22 AZU1 FSTL3 PALM RNU6-2 MIR4745 PRSS57 R3HDM4 BSG TMEM259 WDR18 KISS1R CDC34 GZMM THEG PRTN3 MISP PTBP1 ARID3A ODF3L2
dgv135n111 Chr.19:1014378 - 1156398 on Build GRCh38 Deletion CNN2 TMEM259 ARHGAP45 ABCA7 GPX4 POLR2E RNU6-2 SBNO2

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More Information


Additional Information:

For this assay, SNP(s) [rs76771794] are located under a primer or probe sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.

Set Membership:

 Intragenic Intronic Non-exonic DGV Variation

Panther Classification:

Molecular Function -

DNA-directed RNA polymerase

Gene Ontology Categories:

Function(s) Process(es)


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