Genomic Map
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Target Gene Details
Entrez Gene ID: | 3978 |
Gene Name: | DNA ligase 1 |
Gene Aliases: |
- |
Location: |
Chr.19:48115445-48170603 on Build GRCh38 |
Assay Gene Location: | Within Intron 24 |
| Gene Symbol | Transcript Accession | Exon Location | Assay Transcript Location | Protein ID |
|---|---|---|---|---|
| LIG1 | NM_000234.2 | NP_000225.1 | ||
| NM_001289063.1 | NP_001275992.1 | |||
| NM_001289064.1 | NP_001275993.1 | |||
| NM_001320970.1 | NP_001307899.1 | |||
| NM_001320971.1 | NP_001307900.1 | |||
| NR_110296.1 | ||||
| NR_135497.1 | ||||
| NR_135498.1 | ||||
| NR_135499.1 | ||||
| NR_135500.1 | ||||
| NR_135501.1 | ||||
| XM_017026809.1 | XP_016882298.1 | |||
| AB208791.1 | BAD92028.1 | |||
| AK225863.1 | ||||
| AK297296.1 | ||||
| AK300370.1 | ||||
| AK300607.1 | ||||
| AK314210.1 | ||||
| BC108318.1 | AAI08319.1 | |||
| BC110622.2 | AAI10623.1 | |||
| M36067.1 | AAA59518.1 |
Target Copy Number Variation Details
DGV Version: |
Release date: 2016-05-15, GRCh GRCh38 |
| Target Variation |
Location | CNV Subtype |
Genes |
|---|---|---|---|
| nsv833853 | Chr.19:47982539 - 48184317 on Build GRCh38 | Loss |
 PLA2G4C-AS1
BSPH1
PLA2G4C
LIG1
CABP5
C19orf68
ELSPBP1
|
| nsv9739 | Chr.19:47901840 - 50143063 on Build GRCh38 | Gain+Loss |
SNAR-A5
CGB1
PTH2
CD37
MIR150
ATF5
RPL13A
DHDH
SNAR-A12
ALDH16A1
TSKS
LOC101928295
FUZ
SNAR-A6
PRR12
FAM83E
PRRG2
SNAR-C4
FLT3LG
RCN3
MAMSTR
SNAR-A3
BSPH1
SNAR-A4
PPP1R15A
SCAF1
KCNJ14
SNAR-A11
RPL18
GRIN2D
PTOV1-AS2
SNAR-A13
SEC1P
SNAR-A2
SNAR-C2
PLA2G4C
CGB5
MIR6800
CGB2
NOSIP
CYTH2
SNAR-C5
CCDC155
GFY
FUT2
VRK3
CGB7
CGB3
PPFIA3
LHB
BCAT2
DKKL1
SNAR-G1
SNAR-G2
PLEKHA4
SPHK2
KDELR1
CARD8
PTOV1-AS1
SNAR-B1
FGF21
DBP
CCDC114
FLJ26850
SNAR-C3
SNORD34
PRMT1
ZNF473
IL4I1
BCL2L12
IZUMO1
FUT1
PLA2G4C-AS1
SNAR-A9
SYNGR4
FTL
LIN7B
HSD17B14
TEAD2
MIR4749
SIGLEC11
GYS1
NTN5
MIR4324
MIR4750
TULP2
TMEM143
CGB8
MIR6799
SLC6A16
LOC101059948
SNAR-A7
C19orf73
SNAR-A8
RASIP1
IRF3
SNAR-A14
RUVBL2
RRAS
LOC105447645
PNKP
NUCB1-AS1
LMTK3
AP2A1
SULT2B1
SNAR-B2
RPS11
CPT1C
SLC17A7
SNORD35A
SNAR-D
FCGRT
ADM5
SPACA4
SIGLEC16
LOC100287477
TBC1D17
MIR6798
SNORD35B
ELSPBP1
PIH1D1
SNRNP70
KCNA7
AKT1S1
EMP3
LIG1
CARD8-AS1
MIR4751
NUP62
TRPM4
GRWD1
C19orf68
PTOV1
MED25
SNORD32A
BAX
SNAR-C1
CA11
SNAR-A10
NUCB1
MIR5088
SNAR-A1
SNORD33
HRC
CABP5
ZNF114
LOC105372430
NTF4
|
| esv34181 | Chr.19:48009377 - 48416682 on Build GRCh38 | Loss |
PLA2G4C-AS1
SYNGR4
PLA2G4C
KDELR1
CARD8
ELSPBP1
CCDC114
EMP3
TMEM143
LIG1
CARD8-AS1
CABP5
ZNF114
GRIN2D
C19orf68
|
| nsv953596 | Chr.19:48120744 - 48134943 on Build GRCh38 | Deletion |
LIG1
|
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Set Membership: |
Intragenic
Intronic
Non-exonic
DGV Variation
|
Panther Classification:
Gene Ontology Categories:
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