Genomic Map
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Target Gene Details
Entrez Gene ID: | 3978 |
Gene Name: | DNA ligase 1 |
Gene Aliases: |
- |
Location: |
Chr.19:48115445-48170603 on Build GRCh38 |
Assay Gene Location: | Within Intron 22 |
| Gene Symbol | Transcript Accession | Exon Location | Assay Transcript Location | Protein ID |
|---|---|---|---|---|
| LIG1 | NM_000234.2 | NP_000225.1 | ||
| NM_001289063.1 | NP_001275992.1 | |||
| NM_001289064.1 | NP_001275993.1 | |||
| NM_001320970.1 | NP_001307899.1 | |||
| NM_001320971.1 | NP_001307900.1 | |||
| NR_110296.1 | ||||
| NR_135497.1 | ||||
| NR_135498.1 | ||||
| NR_135499.1 | ||||
| NR_135500.1 | ||||
| NR_135501.1 | ||||
| XM_017026809.1 | XP_016882298.1 | |||
| AB208791.1 | BAD92028.1 | |||
| AK225863.1 | ||||
| AK297296.1 | ||||
| AK300370.1 | ||||
| AK300607.1 | ||||
| AK314210.1 | ||||
| BC108318.1 | AAI08319.1 | |||
| BC110622.2 | AAI10623.1 | |||
| M36067.1 | AAA59518.1 |
Target Copy Number Variation Details
DGV Version: |
Release date: 2016-05-15, GRCh GRCh38 |
| Target Variation |
Location | CNV Subtype |
Genes |
|---|---|---|---|
| nsv833853 | Chr.19:47982539 - 48184317 on Build GRCh38 | Loss |
 CABP5
ELSPBP1
C19orf68
PLA2G4C
LIG1
PLA2G4C-AS1
BSPH1
|
| nsv9739 | Chr.19:47901840 - 50143063 on Build GRCh38 | Gain+Loss |
GFY
ALDH16A1
SNAR-A11
SPACA4
SNAR-C1
PIH1D1
C19orf73
VRK3
SNAR-A4
SNAR-G2
LMTK3
FUT1
MIR4751
SNAR-A10
LIN7B
PRRG2
LOC105447645
SNAR-B2
PPP1R15A
ZNF473
SNAR-A1
SNRNP70
DBP
CYTH2
BCAT2
FUZ
CGB5
SNAR-A13
SLC17A7
NUCB1-AS1
PLA2G4C
CGB8
FGF21
ADM5
SNORD34
SNAR-A2
PRMT1
CGB7
C19orf68
TEAD2
NTF4
PRR12
SNAR-A6
MIR4749
CARD8
MED25
SNORD35B
CA11
MIR6800
MIR5088
CABP5
SIGLEC11
AP2A1
SNAR-A8
SNORD33
PTOV1-AS2
SNORD35A
SNAR-C5
CPT1C
LOC105372430
CCDC155
FAM83E
LOC101059948
GRIN2D
MIR4324
TULP2
RPL18
CCDC114
DHDH
SIGLEC16
SPHK2
RCN3
RRAS
FLJ26850
NUP62
IRF3
SNAR-D
MAMSTR
SLC6A16
SNAR-A7
GRWD1
CGB2
PNKP
MIR6798
CARD8-AS1
SNAR-C4
IZUMO1
MIR6799
LIG1
BAX
CGB3
SULT2B1
SNAR-A12
TSKS
SNAR-C3
RPS11
SNAR-A14
TRPM4
AKT1S1
SNAR-A3
NUCB1
PTOV1
GYS1
MIR150
ELSPBP1
FUT2
NTN5
NOSIP
SCAF1
ZNF114
HSD17B14
BSPH1
KDELR1
RUVBL2
HRC
BCL2L12
KCNJ14
LOC100287477
IL4I1
PLA2G4C-AS1
FCGRT
PLEKHA4
PTH2
SNAR-G1
LHB
SYNGR4
RPL13A
CD37
LOC101928295
FLT3LG
FTL
SEC1P
CGB1
PTOV1-AS1
SNAR-B1
PPFIA3
DKKL1
EMP3
SNAR-A9
ATF5
SNAR-A5
KCNA7
RASIP1
MIR4750
SNAR-C2
TMEM143
SNORD32A
TBC1D17
|
| esv34181 | Chr.19:48009377 - 48416682 on Build GRCh38 | Loss |
PLA2G4C
PLA2G4C-AS1
GRIN2D
CABP5
EMP3
ELSPBP1
CARD8-AS1
C19orf68
CCDC114
SYNGR4
LIG1
ZNF114
TMEM143
CARD8
KDELR1
|
| nsv953596 | Chr.19:48120744 - 48134943 on Build GRCh38 | Deletion |
LIG1
|
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Set Membership: |
Intragenic
Intronic
Non-exonic
DGV Variation
|
Panther Classification:
Gene Ontology Categories:
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