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See other SCAF1 CNV Assays ›
Gene Symbol
SCAF1
Assay Reference Genome
Location

Chr.19:49649294 on build GRCh38
Cytoband
19q13.33
Assay ID Hs04022427_cn
Size
Availability Made To Order
Catalog # 4400291
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Assay Details

Target Gene Details

Entrez Gene ID:

 58506

Gene Name:

 SR-related CTD associated factor 1

Gene Aliases:

 SRA1

Location:

 Chr.19:49640483-49658649 on Build GRCh38

Assay Gene Location:

 Within Intron 8
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
SCAF1 NM_021228.2 NP_067051.2
XM_005259122.4 XP_005259179.1
XM_011527194.2 XP_011525496.1
XM_017027083.1 XP_016882572.1
AK024444.1
BC011662.2 AAH11662.2
BC053992.1 AAH53992.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
nsv469715 Chr.19:49572544 - 49730286 on Build GRCh38 Gain+Loss PRRG2 PRR12 ADM5 IRF3 NOSIP MIR5088 PRMT1 CPT1C BCL2L12 RRAS SCAF1
nsv833865 Chr.19:49572545 - 49730286 on Build GRCh38 Gain+Loss PRRG2 PRR12 ADM5 IRF3 NOSIP MIR5088 PRMT1 CPT1C BCL2L12 RRAS SCAF1
nsv9739 Chr.19:47901840 - 50143063 on Build GRCh38 Gain+Loss FAM83E MIR150 BAX CA11 TRPM4 SNAR-A14 CYTH2 SNAR-A9 PTOV1 SNORD35B LHB FCGRT SNAR-A6 RASIP1 LMTK3 VRK3 RPL13A IL4I1 CCDC155 HSD17B14 SIGLEC11 ZNF473 BCAT2 NUCB1 MIR4324 CGB2 RPS11 GYS1 MIR4751 GFY KDELR1 PNKP PPFIA3 LOC105372430 BSPH1 SNAR-A7 RCN3 PTOV1-AS2 RPL18 DBP CCDC114 CGB3 PTOV1-AS1 KCNA7 LIG1 FUT2 MIR6800 TBC1D17 CARD8-AS1 ATF5 SNORD34 SULT2B1 SNAR-C1 SNAR-A13 SNAR-A4 SNAR-A12 SNORD32A PLA2G4C GRIN2D TULP2 LIN7B NOSIP FTL SNAR-B2 SLC6A16 SNAR-B1 SNAR-A1 ELSPBP1 MAMSTR SNAR-D SYNGR4 NTF4 TEAD2 DHDH SNRNP70 FUT1 SNAR-G2 TMEM143 LOC100287477 IZUMO1 FGF21 CABP5 FLJ26850 ALDH16A1 LOC101059948 PRMT1 MIR4749 CPT1C BCL2L12 CGB8 SNAR-A10 SNAR-A8 AKT1S1 CGB7 CD37 MIR6799 TSKS FLT3LG FUZ MIR6798 MIR4750 NTN5 CGB1 PLA2G4C-AS1 MED25 PRRG2 C19orf68 CARD8 PTH2 PPP1R15A SNAR-A11 HRC RRAS C19orf73 KCNJ14 AP2A1 DKKL1 SNAR-C4 PLEKHA4 LOC101928295 MIR5088 ZNF114 SNAR-C2 GRWD1 SIGLEC16 SNAR-A5 PIH1D1 CGB5 SNAR-G1 SCAF1 SNORD35A EMP3 LOC105447645 PRR12 ADM5 SNAR-C3 SLC17A7 IRF3 SEC1P NUP62 SNAR-A3 SPHK2 SNAR-A2 SPACA4 RUVBL2 SNORD33 NUCB1-AS1 SNAR-C5
nsv817854 Chr.19:49618821 - 49726387 on Build GRCh38 Gain PRR12 ADM5 IRF3 MIR5088 PRMT1 CPT1C BCL2L12 RRAS SCAF1
nsv953600 Chr.19:49555044 - 49938043 on Build GRCh38 Deletion PNKP MIR5088 PTOV1-AS2 PTOV1 PTOV1-AS1 PRMT1 MIR4749 CPT1C BCL2L12 MIR6800 SCAF1 IL4I1 TBC1D17 AKT1S1 PRR12 ADM5 IRF3 MIR6799 ATF5 TSKS FUZ MIR4750 MED25 PRRG2 NUP62 NOSIP RRAS AP2A1 MIR4751
nsv833864 Chr.19:49551790 - 49733819 on Build GRCh38 Gain PRRG2 PRR12 ADM5 IRF3 NOSIP MIR5088 PRMT1 CPT1C BCL2L12 RRAS SCAF1
nsv1160655 Chr.19:49489110 - 49841830 on Build GRCh38 Deletion MIR150 MIR5088 RCN3 SNORD35B FCGRT PTOV1-AS1 PRMT1 CPT1C BCL2L12 MIR6800 SCAF1 SNORD35A RPL13A PRR12 ADM5 IRF3 MIR6799 TSKS FUZ SNORD34 MED25 PRRG2 SNORD32A NOSIP SNORD33 RPS11 RRAS AP2A1
nsv828578 Chr.19:49560777 - 49680548 on Build GRCh38 Loss PRRG2 PRR12 IRF3 NOSIP PRMT1 BCL2L12 RRAS SCAF1
nsv579908 Chr.19:49645135 - 49663393 on Build GRCh38 Loss IRF3 SCAF1

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