Genomic Map
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Target Gene Details
Entrez Gene ID: | 58506 |
Gene Name: | SR-related CTD associated factor 1 |
Gene Aliases: |
SRA1 |
Location: |
Chr.19:49640483-49658649 on Build GRCh38 |
Assay Gene Location: | Within Intron 11 |
| Gene Symbol | Transcript Accession | Exon Location | Assay Transcript Location | Protein ID |
|---|---|---|---|---|
| SCAF1 | NM_021228.2 | NP_067051.2 | ||
| XM_005259122.4 | XP_005259179.1 | |||
| XM_011527194.2 | XP_011525496.1 | |||
| XM_017027083.1 | XP_016882572.1 | |||
| AK024444.1 | ||||
| BC011662.2 | AAH11662.2 | |||
| BC018398.1 | AAH18398.1 | |||
| BC053992.1 | AAH53992.1 | |||
| BQ896877.1 |
Target Copy Number Variation Details
DGV Version: |
Release date: 2016-05-15, GRCh GRCh38 |
| Target Variation |
Location | CNV Subtype |
Genes |
|---|---|---|---|
| nsv469715 | Chr.19:49572544 - 49730286 on Build GRCh38 | Gain+Loss |
 MIR5088
IRF3
SCAF1
NOSIP
PRRG2
RRAS
BCL2L12
PRR12
PRMT1
CPT1C
ADM5
|
| nsv833865 | Chr.19:49572545 - 49730286 on Build GRCh38 | Gain+Loss |
MIR5088
IRF3
SCAF1
NOSIP
PRRG2
RRAS
BCL2L12
PRR12
PRMT1
CPT1C
ADM5
|
| nsv9739 | Chr.19:47901840 - 50143063 on Build GRCh38 | Gain+Loss |
LMTK3
SNAR-A3
CABP5
SNAR-A7
SNAR-A6
BAX
SPACA4
C19orf73
SEC1P
IL4I1
CYTH2
SNAR-G1
CGB8
SCAF1
CARD8
SNAR-B2
CPT1C
CGB1
PPFIA3
AP2A1
SNORD33
SNAR-B1
RPS11
LOC105447645
ZNF473
NTF4
RPL18
MIR4750
HSD17B14
FUT1
ZNF114
CCDC114
SULT2B1
PLA2G4C
FUZ
ATF5
SNAR-A10
CGB5
SNAR-A2
MIR6798
SNORD32A
DBP
NUCB1-AS1
SLC6A16
SNAR-A14
GYS1
SNRNP70
PLA2G4C-AS1
PRRG2
RRAS
PRMT1
SNAR-A1
PNKP
MIR150
RUVBL2
C19orf68
SNAR-C4
SPHK2
NOSIP
SNAR-D
KCNA7
SNORD34
FLT3LG
CD37
SNAR-C3
MIR6800
BSPH1
SNAR-A12
SNAR-A13
TEAD2
BCL2L12
VRK3
DKKL1
GFY
SNAR-A5
SYNGR4
SNORD35B
SNAR-C5
LOC105372430
SIGLEC16
LHB
RASIP1
NUP62
MAMSTR
CA11
SNAR-A9
NUCB1
SNORD35A
CGB2
ALDH16A1
SNAR-A11
LIN7B
MIR5088
SNAR-C2
NTN5
SIGLEC11
IZUMO1
HRC
ELSPBP1
TSKS
PRR12
SNAR-A4
FUT2
MIR4749
TMEM143
DHDH
AKT1S1
LOC101928295
KCNJ14
CGB3
SNAR-C1
TRPM4
GRWD1
PTOV1
BCAT2
RCN3
MIR4751
CARD8-AS1
SNAR-G2
MIR4324
TBC1D17
EMP3
FLJ26850
ADM5
PIH1D1
PTOV1-AS2
IRF3
LOC101059948
PTH2
RPL13A
KDELR1
TULP2
PLEKHA4
FGF21
MIR6799
SLC17A7
FTL
CGB7
FAM83E
PPP1R15A
GRIN2D
CCDC155
LIG1
FCGRT
SNAR-A8
MED25
LOC100287477
PTOV1-AS1
|
| nsv817854 | Chr.19:49618821 - 49726387 on Build GRCh38 | Gain |
MIR5088
IRF3
SCAF1
RRAS
BCL2L12
PRR12
PRMT1
CPT1C
ADM5
|
| nsv579909 | Chr.19:49649784 - 49659652 on Build GRCh38 | Loss |
IRF3
SCAF1
|
| nsv953600 | Chr.19:49555044 - 49938043 on Build GRCh38 | Deletion |
PTOV1
ATF5
NUP62
MIR4751
PRRG2
RRAS
TBC1D17
PRMT1
IL4I1
PNKP
ADM5
MIR5088
PTOV1-AS2
IRF3
SCAF1
NOSIP
TSKS
PRR12
CPT1C
AP2A1
MIR6799
MIR4749
MIR6800
AKT1S1
MIR4750
BCL2L12
MED25
PTOV1-AS1
FUZ
|
| nsv833864 | Chr.19:49551790 - 49733819 on Build GRCh38 | Gain |
MIR5088
IRF3
SCAF1
NOSIP
PRRG2
RRAS
BCL2L12
PRR12
PRMT1
CPT1C
ADM5
|
| nsv1160655 | Chr.19:49489110 - 49841830 on Build GRCh38 | Deletion |
SNORD35B
SNORD32A
RCN3
SNORD35A
PRRG2
RRAS
PRMT1
ADM5
MIR150
MIR5088
IRF3
SCAF1
NOSIP
RPL13A
TSKS
PRR12
CPT1C
SNORD34
AP2A1
MIR6799
SNORD33
RPS11
MIR6800
BCL2L12
FCGRT
MED25
PTOV1-AS1
FUZ
|
| nsv828578 | Chr.19:49560777 - 49680548 on Build GRCh38 | Loss |
IRF3
SCAF1
NOSIP
PRRG2
RRAS
BCL2L12
PRR12
PRMT1
|
| nsv579908 | Chr.19:49645135 - 49663393 on Build GRCh38 | Loss |
IRF3
SCAF1
|
Back To TopMore Information
Set Membership: |
Intragenic
Intronic
Non-exonic
DGV Variation
|
Panther Classification:
Molecular Function -
RNA metabolism protein
RNA processing factor
RNA splicing factor
nucleic acid metabolism protein
Gene Ontology Categories:
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