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See other SCAF1 CNV Assays ›
Gene Symbol
SCAF1
Assay Reference Genome
Location

Chr.19:49656052 on build GRCh38
Cytoband
19q13.33
Assay ID Hs04024774_cn
Size
Availability Made To Order
Catalog # 4400291
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Assay Details

Target Gene Details

Entrez Gene ID:

 58506

Gene Name:

 SR-related CTD associated factor 1

Gene Aliases:

 SRA1

Location:

 Chr.19:49640483-49658649 on Build GRCh38

Assay Gene Location:

 Within Intron 11
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
SCAF1 NM_021228.2 NP_067051.2
XM_005259122.4 XP_005259179.1
XM_011527194.2 XP_011525496.1
XM_017027083.1 XP_016882572.1
AK024444.1
BC011662.2 AAH11662.2
BC018398.1 AAH18398.1
BC053992.1 AAH53992.1
BQ896877.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
nsv469715 Chr.19:49572544 - 49730286 on Build GRCh38 Gain+Loss RRAS SCAF1 CPT1C BCL2L12 ADM5 IRF3 NOSIP PRRG2 PRR12 MIR5088 PRMT1
nsv833865 Chr.19:49572545 - 49730286 on Build GRCh38 Gain+Loss RRAS SCAF1 CPT1C BCL2L12 ADM5 IRF3 NOSIP PRRG2 PRR12 MIR5088 PRMT1
nsv9739 Chr.19:47901840 - 50143063 on Build GRCh38 Gain+Loss ALDH16A1 SNAR-B1 RPS11 SNAR-C3 KDELR1 SNAR-D NTF4 SNAR-A10 SNAR-A8 PNKP TSKS GFY SCAF1 BCL2L12 RUVBL2 TBC1D17 GRIN2D AKT1S1 FUZ AP2A1 CPT1C MIR4749 MIR5088 BSPH1 FTL SPHK2 MIR150 MIR4751 SNAR-A13 FGF21 CGB5 PTOV1-AS2 LOC101928295 MIR6798 RCN3 RRAS GRWD1 CGB1 HRC ZNF114 LOC100287477 CA11 ADM5 SNAR-A1 SNAR-B2 MIR6799 CGB8 KCNA7 PLEKHA4 CGB2 CCDC155 FLT3LG CGB7 SNAR-A9 BCAT2 PLA2G4C PPP1R15A SNAR-C2 IRF3 SNORD35B SNAR-A4 PRMT1 CABP5 SPACA4 LIG1 PTOV1 PTH2 TMEM143 TEAD2 SNRNP70 CARD8 SNAR-C4 LHB BAX SIGLEC16 CD37 MIR4750 C19orf68 MIR4324 LOC105447645 FAM83E SNAR-C1 LIN7B SYNGR4 NOSIP SNAR-A14 RPL18 CCDC114 SNAR-A11 SIGLEC11 SNAR-A3 DHDH NTN5 SLC6A16 SNAR-C5 CARD8-AS1 PTOV1-AS1 SNORD32A SNAR-A7 GYS1 RPL13A NUP62 VRK3 SNORD35A LOC105372430 FUT2 HSD17B14 ZNF473 TRPM4 DBP PPFIA3 SNAR-G1 EMP3 SNORD34 SNAR-A12 DKKL1 SEC1P NUCB1 SNAR-A2 SNAR-A6 TULP2 ELSPBP1 IZUMO1 CYTH2 PRRG2 PRR12 C19orf73 SNAR-A5 SNORD33 CGB3 FCGRT RASIP1 MED25 IL4I1 ATF5 LOC101059948 FLJ26850 PIH1D1 KCNJ14 SNAR-G2 FUT1 PLA2G4C-AS1 SULT2B1 SLC17A7 NUCB1-AS1 MAMSTR LMTK3 MIR6800
nsv470150 Chr.19:49618821 - 49856789 on Build GRCh38 Gain RRAS FUZ MED25 PTOV1-AS1 AP2A1 PTOV1 CPT1C ADM5 MIR4749 MIR5088 MIR6799 TSKS SCAF1 BCL2L12 IRF3 PRR12 PTOV1-AS2 MIR6800 PRMT1
nsv833864 Chr.19:49551790 - 49733819 on Build GRCh38 Gain RRAS SCAF1 CPT1C BCL2L12 ADM5 IRF3 NOSIP PRRG2 PRR12 MIR5088 PRMT1
nsv953600 Chr.19:49555044 - 49938043 on Build GRCh38 Deletion RRAS ADM5 NOSIP MIR6799 PNKP TSKS SCAF1 BCL2L12 IRF3 PRRG2 PRR12 TBC1D17 PRMT1 AKT1S1 FUZ MED25 PTOV1-AS1 AP2A1 PTOV1 CPT1C IL4I1 MIR4749 ATF5 NUP62 MIR5088 MIR4751 PTOV1-AS2 MIR4750 MIR6800
nsv579909 Chr.19:49649784 - 49659652 on Build GRCh38 Loss SCAF1 IRF3
nsv1160655 Chr.19:49489110 - 49841830 on Build GRCh38 Deletion RRAS RPS11 ADM5 NOSIP MIR6799 TSKS SCAF1 BCL2L12 IRF3 PRRG2 PRR12 SNORD35B SNORD33 PRMT1 FCGRT FUZ MED25 PTOV1-AS1 AP2A1 SNORD32A CPT1C RPL13A MIR5088 SNORD35A MIR150 SNORD34 MIR6800 RCN3
nsv828578 Chr.19:49560777 - 49680548 on Build GRCh38 Loss RRAS SCAF1 BCL2L12 IRF3 NOSIP PRRG2 PRR12 PRMT1
nsv579908 Chr.19:49645135 - 49663393 on Build GRCh38 Loss SCAF1 IRF3

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