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See other PLA2G4C CNV Assays ›
Gene Symbol
PLA2G4C
Assay Reference Genome
Location

Chr.19:48072429 on build GRCh38
Cytoband
19q13.33
Assay ID Hs04025261_cn
Size
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Catalog # 4400291
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Assay Details

Target Gene Details

Entrez Gene ID:

 8605

Gene Name:

 phospholipase A2 group IVC

Gene Aliases:

 CPLA2-gamma

Location:

 Chr.19:48047843-48111445 on Build GRCh38

Assay Gene Location:

 Within Intron 14
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
PLA2G4C NM_001159322.1 NP_001152794.1
NM_001159323.1 NP_001152795.1
NM_003706.2 NP_003697.2
XM_011527431.2 XP_011525733.1
XM_011527432.2 XP_011525734.1
XM_011527433.2 XP_011525735.1
XM_017027411.1 XP_016882900.1
XM_017027412.1 XP_016882901.1
XM_017027413.1 XP_016882902.1
AF058921.1 AAC32823.1
AF065214.1 AAC78835.1
AK022440.1
AK124241.1 1 623
AK295400.1
AK314524.1
BC063416.1 AAH63416.1
CR456816.1 CAG33097.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
nsv833853 Chr.19:47982539 - 48184317 on Build GRCh38 Loss PLA2G4C-AS1 C19orf68 LIG1 BSPH1 CABP5 ELSPBP1 PLA2G4C
nsv9739 Chr.19:47901840 - 50143063 on Build GRCh38 Gain+Loss GYS1 FLT3LG GFY SIGLEC16 GRWD1 SNORD35B PLA2G4C DBP CGB1 ZNF473 ADM5 KCNA7 CCDC155 PIH1D1 ATF5 PTH2 LOC105372430 CGB2 VRK3 SNAR-A4 LHB RPL13A PLA2G4C-AS1 MAMSTR SNAR-D FUZ MIR6798 PNKP SNAR-C3 SNAR-A5 ZNF114 CGB3 NUP62 CYTH2 SNAR-C1 SNAR-A2 SNAR-A14 NUCB1 SNAR-G2 SNAR-G1 CA11 SEC1P MIR150 FTL SNAR-A12 FAM83E LIG1 SNAR-A6 LMTK3 SNAR-C2 SNAR-A3 PPFIA3 FUT2 PTOV1-AS1 SNAR-A10 PRR12 NOSIP SNAR-B2 MED25 RPL18 AP2A1 BSPH1 SNORD32A SNAR-B1 RUVBL2 FUT1 CARD8 CD37 SPHK2 BCAT2 SNORD35A SPACA4 PRRG2 NUCB1-AS1 BAX AKT1S1 TBC1D17 KDELR1 MIR4749 FLJ26850 C19orf68 IZUMO1 LOC101928295 SNORD34 SNAR-A11 SNORD33 PTOV1-AS2 SNAR-A13 CCDC114 SLC17A7 IL4I1 ELSPBP1 MIR5088 SNAR-A9 RCN3 MIR6799 HSD17B14 ALDH16A1 RPS11 CGB8 CGB7 RASIP1 TMEM143 PTOV1 KCNJ14 SNAR-C5 PLEKHA4 SYNGR4 SCAF1 GRIN2D SNAR-C4 CARD8-AS1 NTN5 SLC6A16 SNAR-A8 RRAS CPT1C TULP2 LOC101059948 C19orf73 DKKL1 PPP1R15A TRPM4 SIGLEC11 FGF21 DHDH TSKS SNAR-A7 BCL2L12 TEAD2 SULT2B1 MIR4750 SNAR-A1 PRMT1 SNRNP70 LOC105447645 IRF3 FCGRT NTF4 HRC MIR4324 LIN7B MIR4751 MIR6800 CGB5 CABP5 EMP3 LOC100287477
dgv3611n100 Chr.19:48024325 - 48081406 on Build GRCh38 Gain PLA2G4C-AS1 CABP5 ELSPBP1 PLA2G4C
esv34181 Chr.19:48009377 - 48416682 on Build GRCh38 Loss KDELR1 TMEM143 PLA2G4C PLA2G4C-AS1 C19orf68 SYNGR4 CARD8 LIG1 CABP5 GRIN2D EMP3 ZNF114 CARD8-AS1 CCDC114 ELSPBP1
nsv2516 Chr.19:48046715 - 48080669 on Build GRCh38 Insertion PLA2G4C-AS1 CABP5 PLA2G4C
nsv1062163 Chr.19:48040339 - 48075632 on Build GRCh38 Gain PLA2G4C-AS1 CABP5 PLA2G4C
nsv1058785 Chr.19:48004749 - 48075632 on Build GRCh38 Gain PLA2G4C-AS1 CABP5 ELSPBP1 PLA2G4C
esv3893228 Chr.19:48002211 - 48072851 on Build GRCh38 Loss PLA2G4C-AS1 CABP5 ELSPBP1 PLA2G4C
nsv1058622 Chr.19:47798576 - 48077885 on Build GRCh38 Gain SNAR-C1 SNAR-A2 BSPH1 CRX SNAR-A1 TPRX1 LINC01595 PLA2G4C PLA2G4C-AS1 SNAR-A12 SNAR-C5 CABP5 SNAR-C4 SNAR-C3 SNAR-C2 SNAR-A3 SNAR-A13 SULT2A1 ELSPBP1

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More Information


Additional Information:

For this assay, SNP(s) [rs78000450] are located under a primer or probe sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.

Set Membership:

 Intragenic Intronic Non-exonic DGV Variation

Panther Classification:

Molecular Function -

phospholipase

Gene Ontology Categories:

Function(s) Process(es)


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