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See other PLA2G4C CNV Assays ›
Gene Symbol
PLA2G4C
Assay Reference Genome
Location

Chr.19:48072429 on build GRCh38
Cytoband
19q13.33
Assay ID Hs04025261_cn
Size
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Catalog # 4400291
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Assay Details

Target Gene Details

Entrez Gene ID:

 8605

Gene Name:

 phospholipase A2 group IVC

Gene Aliases:

 CPLA2-gamma

Location:

 Chr.19:48047843-48111445 on Build GRCh38

Assay Gene Location:

 Within Intron 14
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
PLA2G4C NM_001159322.1 NP_001152794.1
NM_001159323.1 NP_001152795.1
NM_003706.2 NP_003697.2
XM_011527431.2 XP_011525733.1
XM_011527432.2 XP_011525734.1
XM_011527433.2 XP_011525735.1
XM_017027411.1 XP_016882900.1
XM_017027412.1 XP_016882901.1
XM_017027413.1 XP_016882902.1
AF058921.1 AAC32823.1
AF065214.1 AAC78835.1
AK022440.1
AK124241.1 1 623
AK295400.1
AK314524.1
BC063416.1 AAH63416.1
CR456816.1 CAG33097.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
nsv833853 Chr.19:47982539 - 48184317 on Build GRCh38 Loss PLA2G4C-AS1 ELSPBP1 CABP5 PLA2G4C C19orf68 BSPH1 LIG1
nsv9739 Chr.19:47901840 - 50143063 on Build GRCh38 Gain+Loss SNAR-A12 GRWD1 ADM5 IL4I1 GYS1 TSKS MIR6798 ALDH16A1 RPL18 NTN5 SNAR-D SNAR-B2 SNAR-A4 PTOV1-AS1 FUT1 PRMT1 GFY SNAR-G1 HSD17B14 SNAR-A6 CABP5 TRPM4 SNAR-A11 MIR4750 SLC6A16 SNAR-A13 SNAR-G2 BAX GRIN2D HRC CGB5 LHB PLA2G4C NTF4 MED25 AP2A1 ZNF473 SNAR-A3 ZNF114 EMP3 RPL13A SNORD32A CD37 SIGLEC16 C19orf68 NUCB1-AS1 FAM83E FUT2 FLJ26850 LOC100287477 KDELR1 IRF3 MIR6799 SNRNP70 PTOV1 PPFIA3 SNAR-B1 ELSPBP1 SNAR-A9 CARD8-AS1 BSPH1 ATF5 TMEM143 PRR12 AKT1S1 FCGRT BCAT2 FTL FLT3LG RCN3 MIR150 CARD8 SNAR-A10 RRAS SNAR-A2 FUZ SPACA4 LOC101928295 CGB3 SIGLEC11 PIH1D1 MIR4751 CGB1 SNORD35B PLA2G4C-AS1 SNAR-A5 SNAR-C2 NUP62 CYTH2 RUVBL2 SNAR-A14 CPT1C MIR4749 SNORD33 MAMSTR C19orf73 LMTK3 MIR5088 SEC1P LOC105447645 NOSIP CA11 LIG1 MIR6800 SLC17A7 SCAF1 LIN7B FGF21 PRRG2 TULP2 SNORD34 DKKL1 DBP RASIP1 KCNJ14 SPHK2 CGB8 CCDC155 PNKP PPP1R15A CCDC114 BCL2L12 PLEKHA4 NUCB1 TEAD2 SNORD35A SNAR-C5 VRK3 PTOV1-AS2 RPS11 DHDH PTH2 MIR4324 TBC1D17 CGB7 CGB2 SNAR-A8 SNAR-C4 SNAR-C3 KCNA7 IZUMO1 SULT2B1 SNAR-A1 SNAR-C1 LOC101059948 SYNGR4 LOC105372430 SNAR-A7
esv34181 Chr.19:48009377 - 48416682 on Build GRCh38 Loss PLA2G4C-AS1 ZNF114 EMP3 CABP5 CARD8 C19orf68 ELSPBP1 CCDC114 SYNGR4 GRIN2D CARD8-AS1 KDELR1 PLA2G4C LIG1 TMEM143
dgv3611n100 Chr.19:48024325 - 48081406 on Build GRCh38 Gain PLA2G4C-AS1 ELSPBP1 CABP5 PLA2G4C
nsv1058785 Chr.19:48004749 - 48075632 on Build GRCh38 Gain PLA2G4C-AS1 ELSPBP1 CABP5 PLA2G4C
nsv1062163 Chr.19:48040339 - 48075632 on Build GRCh38 Gain PLA2G4C-AS1 CABP5 PLA2G4C
nsv2516 Chr.19:48046715 - 48080669 on Build GRCh38 Insertion PLA2G4C-AS1 CABP5 PLA2G4C
esv3893228 Chr.19:48002211 - 48072851 on Build GRCh38 Loss PLA2G4C-AS1 ELSPBP1 CABP5 PLA2G4C
nsv1058622 Chr.19:47798576 - 48077885 on Build GRCh38 Gain SNAR-A12 PLA2G4C-AS1 SNAR-A3 SNAR-C2 CRX CABP5 SNAR-A2 SNAR-A13 SNAR-C4 SNAR-C3 ELSPBP1 SULT2A1 SNAR-A1 SNAR-C1 TPRX1 LINC01595 SNAR-C5 PLA2G4C BSPH1

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More Information


Additional Information:

For this assay, SNP(s) [rs78000450] are located under a primer or probe sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.

Set Membership:

 Intragenic Intronic Non-exonic DGV Variation

Panther Classification:

Molecular Function -

phospholipase

Gene Ontology Categories:

Function(s) Process(es)


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