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See other SCAF1 CNV Assays ›
Gene Symbol
SCAF1
Assay Reference Genome
Location

Chr.19:49650171 on build GRCh38
Cytoband
19q13.33
Assay ID Hs04026154_cn
Size
Availability Made To Order
Catalog # 4400291
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Assay Details

Target Gene Details

Entrez Gene ID:

 58506

Gene Name:

 SR-related CTD associated factor 1

Gene Aliases:

 SRA1

Location:

 Chr.19:49640483-49658649 on Build GRCh38

Assay Gene Location:

 Within Intron 8
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
SCAF1 NM_021228.2 NP_067051.2
XM_005259122.4 XP_005259179.1
XM_011527194.2 XP_011525496.1
XM_017027083.1 XP_016882572.1
AK024444.1
BC011662.2 AAH11662.2
BC053992.1 AAH53992.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
nsv469715 Chr.19:49572544 - 49730286 on Build GRCh38 Gain+Loss ADM5 BCL2L12 IRF3 PRRG2 CPT1C NOSIP PRMT1 MIR5088 RRAS SCAF1 PRR12
nsv833865 Chr.19:49572545 - 49730286 on Build GRCh38 Gain+Loss ADM5 BCL2L12 IRF3 PRRG2 CPT1C NOSIP PRMT1 MIR5088 RRAS SCAF1 PRR12
nsv9739 Chr.19:47901840 - 50143063 on Build GRCh38 Gain+Loss PIH1D1 GRWD1 TSKS FTL SPACA4 KCNJ14 PRR12 PTOV1-AS1 SNAR-A6 SNORD35B LMTK3 CARD8-AS1 PTH2 SNAR-A2 FLT3LG SNAR-C2 KCNA7 PPFIA3 PPP1R15A SEC1P FUT1 CABP5 FLJ26850 NUCB1 CCDC155 LIN7B SULT2B1 FAM83E EMP3 IRF3 SNAR-A14 CGB8 SNORD34 DHDH PLEKHA4 LOC100287477 CA11 SIGLEC16 BSPH1 RPL13A SPHK2 RUVBL2 GYS1 MAMSTR SNAR-G1 RPL18 SNAR-B2 MIR4750 RRAS LOC101928295 CGB1 LHB SIGLEC11 LOC105372430 GRIN2D VRK3 LOC101059948 PTOV1-AS2 SNRNP70 PLA2G4C KDELR1 ADM5 TMEM143 SNAR-A11 SNORD32A RCN3 SCAF1 SNAR-G2 NUCB1-AS1 SNORD33 CCDC114 SNAR-B1 SNAR-A3 BCAT2 SNAR-A8 C19orf68 MIR5088 CD37 NTF4 SNAR-A9 TBC1D17 SNAR-C3 RPS11 SLC6A16 FUT2 CYTH2 FCGRT FUZ CGB3 RASIP1 SNAR-C4 SNAR-A12 SNAR-A13 MIR150 LOC105447645 CGB5 ELSPBP1 TULP2 PNKP CGB7 FGF21 SNAR-A7 SNAR-A10 SNAR-C1 TRPM4 DBP MIR4749 MIR6800 PLA2G4C-AS1 CARD8 NOSIP SNAR-D PRMT1 MIR6799 HRC TEAD2 SNAR-A1 ZNF473 GFY SNAR-C5 MIR6798 MED25 CGB2 MIR4324 BAX MIR4751 DKKL1 SYNGR4 BCL2L12 SNORD35A ZNF114 PRRG2 CPT1C ALDH16A1 NTN5 ATF5 HSD17B14 PTOV1 AP2A1 IZUMO1 SLC17A7 SNAR-A4 C19orf73 IL4I1 SNAR-A5 LIG1 NUP62 AKT1S1
nsv470150 Chr.19:49618821 - 49856789 on Build GRCh38 Gain ADM5 BCL2L12 IRF3 MIR4749 CPT1C MIR6800 TSKS PRMT1 FUZ MIR6799 RRAS PTOV1 SCAF1 PRR12 PTOV1-AS1 AP2A1 MED25 MIR5088 PTOV1-AS2
nsv579909 Chr.19:49649784 - 49659652 on Build GRCh38 Loss IRF3 SCAF1
nsv833864 Chr.19:49551790 - 49733819 on Build GRCh38 Gain ADM5 BCL2L12 IRF3 PRRG2 CPT1C NOSIP PRMT1 MIR5088 RRAS SCAF1 PRR12
nsv953600 Chr.19:49555044 - 49938043 on Build GRCh38 Deletion ADM5 IRF3 MIR4749 MIR6800 TSKS NOSIP PRMT1 MIR6799 SCAF1 PRR12 PTOV1-AS1 MED25 MIR5088 MIR4751 TBC1D17 BCL2L12 PRRG2 CPT1C MIR4750 ATF5 FUZ RRAS PTOV1 AP2A1 IL4I1 PTOV1-AS2 PNKP NUP62 AKT1S1
nsv1160655 Chr.19:49489110 - 49841830 on Build GRCh38 Deletion ADM5 IRF3 SNORD32A MIR6800 TSKS SNORD34 NOSIP PRMT1 MIR6799 RCN3 SCAF1 PRR12 PTOV1-AS1 SNORD33 MED25 SNORD35B RPL13A MIR5088 BCL2L12 SNORD35A PRRG2 RPS11 CPT1C FCGRT FUZ RRAS AP2A1 MIR150
nsv828578 Chr.19:49560777 - 49680548 on Build GRCh38 Loss BCL2L12 IRF3 PRRG2 NOSIP PRMT1 RRAS SCAF1 PRR12
nsv579908 Chr.19:49645135 - 49663393 on Build GRCh38 Loss IRF3 SCAF1

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