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See other SCAF1 CNV Assays ›
Gene Symbol
SCAF1
Assay Reference Genome
Location

Chr.19:49650171 on build GRCh38
Cytoband
19q13.33
Assay ID Hs04026154_cn
Size
Availability Made To Order
Catalog # 4400291
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Assay Details

Target Gene Details

Entrez Gene ID:

 58506

Gene Name:

 SR-related CTD associated factor 1

Gene Aliases:

 SRA1

Location:

 Chr.19:49640483-49658649 on Build GRCh38

Assay Gene Location:

 Within Intron 8
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
SCAF1 NM_021228.2 NP_067051.2
XM_005259122.4 XP_005259179.1
XM_011527194.2 XP_011525496.1
XM_017027083.1 XP_016882572.1
AK024444.1
BC011662.2 AAH11662.2
BC053992.1 AAH53992.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
nsv469715 Chr.19:49572544 - 49730286 on Build GRCh38 Gain+Loss CPT1C IRF3 PRRG2 PRMT1 MIR5088 ADM5 SCAF1 PRR12 BCL2L12 RRAS NOSIP
nsv833865 Chr.19:49572545 - 49730286 on Build GRCh38 Gain+Loss CPT1C IRF3 PRRG2 PRMT1 MIR5088 ADM5 SCAF1 PRR12 BCL2L12 RRAS NOSIP
nsv9739 Chr.19:47901840 - 50143063 on Build GRCh38 Gain+Loss SNAR-A12 TSKS SNORD33 LOC101059948 CABP5 FLJ26850 FGF21 PTH2 SNAR-C1 MIR6800 FTL C19orf73 SNORD32A SPHK2 SIGLEC11 EMP3 ZNF114 LOC105447645 SNAR-A13 SNAR-C2 CCDC114 SEC1P GFY RRAS TBC1D17 ZNF473 LOC101928295 SNAR-A7 CPT1C PRRG2 BCL2L12 SNAR-D SNAR-A8 GRIN2D BAX MIR6799 NUCB1 FCGRT TEAD2 SNAR-A10 IL4I1 MED25 RASIP1 SNAR-A9 FUT1 SNAR-G1 LIG1 NOSIP PTOV1-AS1 SYNGR4 SNAR-G2 SNAR-B2 NTN5 ALDH16A1 PIH1D1 CARD8-AS1 SNAR-C4 CGB5 PNKP KCNA7 TMEM143 SPACA4 SNORD35B CARD8 ATF5 LOC105372430 SNAR-A11 KCNJ14 DHDH MIR4324 LIN7B LHB HSD17B14 CGB1 MIR150 BSPH1 RPS11 HRC RCN3 FAM83E DKKL1 DBP PLEKHA4 MIR6798 CA11 SLC6A16 SULT2B1 SNORD35A MIR4751 PRMT1 LOC100287477 SNAR-C5 AKT1S1 SNORD34 FLT3LG SNAR-A14 NUP62 NUCB1-AS1 RPL13A CGB8 VRK3 SIGLEC16 SNAR-A3 PRR12 BCAT2 TULP2 NTF4 MIR4749 PLA2G4C CGB3 SNAR-B1 AP2A1 SNRNP70 CGB2 LMTK3 SCAF1 SNAR-A5 MAMSTR RUVBL2 ELSPBP1 PPP1R15A RPL18 GRWD1 IRF3 CGB7 CCDC155 FUT2 IZUMO1 PTOV1-AS2 FUZ PLA2G4C-AS1 MIR5088 C19orf68 MIR4750 SNAR-A1 KDELR1 SNAR-C3 SLC17A7 CYTH2 SNAR-A2 PTOV1 PPFIA3 TRPM4 ADM5 CD37 GYS1 SNAR-A6 SNAR-A4
nsv817854 Chr.19:49618821 - 49726387 on Build GRCh38 Gain CPT1C IRF3 PRMT1 MIR5088 ADM5 SCAF1 PRR12 BCL2L12 RRAS
nsv953600 Chr.19:49555044 - 49938043 on Build GRCh38 Deletion TSKS MIR4749 MIR6799 AP2A1 SCAF1 MIR6800 IL4I1 MED25 IRF3 NOSIP PTOV1-AS1 PTOV1-AS2 FUZ MIR4751 PRMT1 MIR5088 AKT1S1 PNKP RRAS TBC1D17 NUP62 MIR4750 CPT1C ATF5 PTOV1 PRRG2 ADM5 PRR12 BCL2L12
nsv833864 Chr.19:49551790 - 49733819 on Build GRCh38 Gain CPT1C IRF3 PRRG2 PRMT1 MIR5088 ADM5 SCAF1 PRR12 BCL2L12 RRAS NOSIP
nsv579909 Chr.19:49649784 - 49659652 on Build GRCh38 Loss IRF3 SCAF1
nsv1160655 Chr.19:49489110 - 49841830 on Build GRCh38 Deletion TSKS SNORD33 MIR150 MIR6799 FCGRT AP2A1 RPS11 SCAF1 MIR6800 RCN3 MED25 SNORD32A IRF3 NOSIP PTOV1-AS1 FUZ SNORD35A PRMT1 MIR5088 SNORD34 RRAS SNORD35B RPL13A CPT1C PRRG2 ADM5 PRR12 BCL2L12
nsv828578 Chr.19:49560777 - 49680548 on Build GRCh38 Loss IRF3 PRRG2 PRMT1 SCAF1 PRR12 BCL2L12 RRAS NOSIP
nsv579908 Chr.19:49645135 - 49663393 on Build GRCh38 Loss IRF3 SCAF1

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