Hs04027820_cn

• Gene Symbol: PTOV1
• Assay Reference Genome Location: Chr.19:49852694 on build GRCh38
• Cytoband: 19q13.33

Target Gene Details

• Entrez Gene ID: 53635
• Gene Name: prostate tumor overexpressed 1
• Gene Aliases: ACID2, PTOV-1
• Location: Chr.19:49850726-49860744 on Build GRCh38
• Assay Gene Location: Within Intron 2

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
PTOV1	NM_001305105.1			NP_001292034.1
	NM_001305108.1			NP_001292037.1
	NM_017432.4			NP_059128.2
	NR_130963.1
	XM_005258998.4			XP_005259055.1
	XM_006723244.3			XP_006723307.1
	XM_011527033.1			XP_011525335.1
	XM_011527034.2			XP_011525336.1
	XM_011527035.1			XP_011525337.1
	XM_017026879.1			XP_016882368.1
	XM_017026880.1			XP_016882369.1
	AJ617480.1			CAE84582.1
	AK057817.1
	AK294366.1
	AY358168.1			AAQ88535.1
	DB496336.1
	U79287.1

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
nsv9739	Chr.19:47901840 - 50143063 on Build GRCh38	Gain+Loss	SNAR-A13 LIG1 LOC100287477 SNAR-B2 FUT2 SCAF1 LOC101059948 BAX RPS11 SNORD35B PPP1R15A SNAR-C2 SNAR-D PTOV1 SNAR-G2 SPHK2 NTF4 FLT3LG IRF3 CGB2 SEC1P SNAR-A10 SPACA4 NUCB1 KCNJ14 PLEKHA4 PTH2 PPFIA3 FUZ SNORD32A RUVBL2 CPT1C IZUMO1 AKT1S1 MIR150 MIR6798 AP2A1 SNAR-A6 LOC105447645 TMEM143 SNAR-B1 CABP5 SLC6A16 RCN3 TSKS PIH1D1 GYS1 RRAS PNKP SNORD33 C19orf68 DBP SNAR-A8 MAMSTR PLA2G4C SIGLEC16 SULT2B1 CARD8-AS1 SNAR-A12 HSD17B14 MIR6799 CGB3 PRMT1 ADM5 MIR4749 ALDH16A1 RPL13A MIR4750 SNRNP70 MIR4324 SNAR-A2 CA11 SLC17A7 CGB7 SNAR-A11 FTL SNAR-C3 GFY LHB FUT1 PTOV1-AS1 SNAR-C5 SNAR-A9 GRWD1 SNAR-A1 CGB5 CGB8 SNORD34 DKKL1 TRPM4 SNORD35A FGF21 MIR6800 BCAT2 SNAR-C1 LOC101928295 BCL2L12 SNAR-C4 SIGLEC11 TEAD2 DHDH NOSIP PRR12 SNAR-A4 TULP2 SNAR-A5 SNAR-A3 CCDC155 SNAR-A14 LOC105372430 HRC ZNF473 MED25 KDELR1 CARD8 BSPH1 EMP3 RASIP1 CD37 FCGRT LMTK3 NUP62 PLA2G4C-AS1 CCDC114 PRRG2 FLJ26850 PTOV1-AS2 SNAR-G1 ATF5 SYNGR4 IL4I1 NTN5 NUCB1-AS1 RPL18 VRK3 LIN7B KCNA7 MIR5088 ELSPBP1 ZNF114 C19orf73 SNAR-A7 CGB1 CYTH2 FAM83E GRIN2D TBC1D17 MIR4751
nsv470150	Chr.19:49618821 - 49856789 on Build GRCh38	Gain	PRR12 TSKS RRAS FUZ SCAF1 MIR5088 CPT1C MIR6800 PTOV1 PTOV1-AS1 MIR6799 MED25 PRMT1 ADM5 MIR4749 AP2A1 BCL2L12 IRF3 PTOV1-AS2
dgv53n68	Chr.19:49724393 - 49943224 on Build GRCh38	Loss	IL4I1 TSKS FUZ PNKP NUP62 MIR6800 AKT1S1 PTOV1 PTOV1-AS1 MIR6799 MED25 MIR4749 AP2A1 MIR4750 PTOV1-AS2 ATF5 TBC1D17 MIR4751
nsv953600	Chr.19:49555044 - 49938043 on Build GRCh38	Deletion	TSKS RRAS PNKP SCAF1 NUP62 MIR6800 PTOV1 MIR6799 PRMT1 ADM5 MIR4749 PRRG2 BCL2L12 IRF3 MIR4750 PTOV1-AS2 ATF5 NOSIP IL4I1 PRR12 FUZ MIR5088 CPT1C AKT1S1 PTOV1-AS1 MED25 AP2A1 TBC1D17 MIR4751
dgv54n68	Chr.19:49848512 - 50008788 on Build GRCh38	Loss	IL4I1 PNKP VRK3 NUP62 SIGLEC16 AKT1S1 PTOV1 PTOV1-AS1 MIR4749 MIR4750 PTOV1-AS2 SIGLEC11 ATF5 TBC1D17 MIR4751

More Information

Additional Information:

For this assay, SNP(s) [rs75261549] are located under a primer or probe sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.

• Set Membership: Intragenic, Intronic, Non-exonic, DGV Variation

Panther Classification:

Molecular Function -

general transcription factor

Gene Ontology Categories:

Process(es)

transcription, DNA-templated
regulation of transcription, DNA-templated