Genomic Map
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Target Gene Details
Entrez Gene ID: | 3978 |
Gene Name: | DNA ligase 1 |
Gene Aliases: |
- |
Location: |
Chr.19:48115445-48170603 on Build GRCh38 |
Assay Gene Location: | Within Intron 17 |
| Gene Symbol | Transcript Accession | Exon Location | Assay Transcript Location | Protein ID |
|---|---|---|---|---|
| LIG1 | NM_000234.2 | NP_000225.1 | ||
| NM_001289063.1 | NP_001275992.1 | |||
| NM_001289064.1 | NP_001275993.1 | |||
| NM_001320970.1 | NP_001307899.1 | |||
| NM_001320971.1 | NP_001307900.1 | |||
| NR_110296.1 | ||||
| NR_135497.1 | ||||
| NR_135498.1 | ||||
| NR_135499.1 | ||||
| NR_135500.1 | ||||
| NR_135501.1 | ||||
| XM_017026809.1 | XP_016882298.1 | |||
| AB208791.1 | BAD92028.1 | |||
| AK225863.1 | ||||
| AK297296.1 | ||||
| AK300370.1 | ||||
| AK300607.1 | ||||
| AK314210.1 | ||||
| BC108318.1 | AAI08319.1 | |||
| BC110622.2 | AAI10623.1 | |||
| M36067.1 | AAA59518.1 |
Target Copy Number Variation Details
DGV Version: |
Release date: 2016-05-15, GRCh GRCh38 |
| Target Variation |
Location | CNV Subtype |
Genes |
|---|---|---|---|
| nsv833853 | Chr.19:47982539 - 48184317 on Build GRCh38 | Loss |
 PLA2G4C
LIG1
CABP5
PLA2G4C-AS1
BSPH1
C19orf68
ELSPBP1
|
| nsv9739 | Chr.19:47901840 - 50143063 on Build GRCh38 | Gain+Loss |
NUP62
SNAR-A8
CGB5
PRR12
PTOV1
FTL
TULP2
SIGLEC11
BAX
PTH2
FLJ26850
LOC101059948
NUCB1
EMP3
LOC105447645
TBC1D17
SNAR-A12
CABP5
TRPM4
ZNF473
MED25
LIN7B
IRF3
NOSIP
KCNA7
SYNGR4
CGB3
CCDC155
ADM5
PLA2G4C-AS1
SNAR-C4
NTF4
SCAF1
ATF5
CARD8-AS1
LOC100287477
SNAR-A11
SPACA4
FGF21
GYS1
RPL13A
SNAR-A14
SNAR-A13
SNORD33
FLT3LG
MIR6799
FAM83E
SNAR-G2
CGB2
CD37
NTN5
PLEKHA4
DKKL1
FUZ
TEAD2
PRMT1
SNAR-D
HSD17B14
SNAR-G1
LIG1
SEC1P
LOC105372430
CGB8
SNAR-A2
MIR4749
MIR4751
CCDC114
FCGRT
CPT1C
PPP1R15A
RPL18
CGB7
SNAR-A5
RPS11
CGB1
IL4I1
SLC6A16
LOC101928295
GRIN2D
SPHK2
SNAR-A4
SLC17A7
RRAS
TSKS
VRK3
SNORD34
GRWD1
RCN3
ALDH16A1
PPFIA3
MIR5088
DBP
BSPH1
BCL2L12
SNAR-B1
C19orf68
ELSPBP1
MIR4324
PLA2G4C
SNAR-C2
KDELR1
FUT2
BCAT2
CARD8
SNAR-A10
SNAR-C5
SNAR-A9
SNAR-A6
SNAR-A7
MIR6800
SNAR-C3
RUVBL2
CYTH2
SNAR-B2
SNORD35B
SNAR-A3
SNAR-C1
LMTK3
TMEM143
PIH1D1
SIGLEC16
DHDH
MIR6798
PTOV1-AS2
KCNJ14
SNRNP70
PTOV1-AS1
ZNF114
MIR150
MAMSTR
RASIP1
PNKP
HRC
AP2A1
SULT2B1
MIR4750
LHB
SNAR-A1
AKT1S1
GFY
SNORD32A
CA11
PRRG2
SNORD35A
C19orf73
IZUMO1
FUT1
NUCB1-AS1
|
| esv34181 | Chr.19:48009377 - 48416682 on Build GRCh38 | Loss |
CCDC114
CABP5
CARD8-AS1
TMEM143
C19orf68
ELSPBP1
PLA2G4C
KDELR1
LIG1
CARD8
ZNF114
SYNGR4
GRIN2D
EMP3
PLA2G4C-AS1
|
| nsv953596 | Chr.19:48120744 - 48134943 on Build GRCh38 | Deletion |
LIG1
|
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Set Membership: |
Intragenic
Intronic
Non-exonic
DGV Variation
|
Panther Classification:
Gene Ontology Categories:
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