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See other POLR2E CNV Assays ›
Gene Symbol
POLR2E
Assay Reference Genome
Location

Chr.19:1095441 on build GRCh38
Cytoband
19p13.3
Assay ID Hs04030165_cn
Size
Availability Made To Order
Catalog # 4400291
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Assay Details

Target Gene Details

Entrez Gene ID:

 5434

Gene Name:

 RNA polymerase II subunit E

Gene Aliases:

 RPABC1, RPB5, XAP4, hRPB25, hsRPB5

Location:

 Chr.19:1086579-1095392 on Build GRCh38

Assay Gene Location:

 Overlaps - Exon 1
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
POLR2E NM_001316323.1 NP_001303252.1
NM_001316324.1 NP_001303253.1
NM_002695.3 NP_002686.2
XM_011528070.2 XP_011526372.1
XM_017026883.1 XP_016882372.1
DC414435.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
nsv1058677 Chr.19:1054061 - 1283189 on Build GRCh38 Loss ARHGAP45 CIRBP-AS1 CBARP LOC102725180 POLR2E ABCA7 ATP5D SBNO2 STK11 GPX4 MIDN CIRBP EFNA2 C19orf24
nsv9662 Chr.19:893394 - 1317740 on Build GRCh38 Gain ARHGAP45 ARID3A CIRBP-AS1 TMEM259 CBARP LOC102725180 POLR2E ABCA7 RNU6-9 ATP5D GRIN3B SBNO2 R3HDM4 RNU6-2 KISS1R STK11 WDR18 CNN2 GPX4 MIDN CIRBP EFNA2 C19orf24 LOC105372235
dgv136n111 Chr.19:1038223 - 1329640 on Build GRCh38 Deletion ARHGAP45 CIRBP-AS1 CBARP LOC102725180 POLR2E ABCA7 ATP5D SBNO2 STK11 CNN2 GPX4 MIDN CIRBP EFNA2 C19orf24
nsv1160555 Chr.19:887275 - 1346084 on Build GRCh38 Deletion MED16 ARID3A RNU6-9 ATP5D GRIN3B RNU6-2 WDR18 GPX4 CIRBP EFNA2 ARHGAP45 CIRBP-AS1 TMEM259 CBARP LOC102725180 POLR2E ABCA7 SBNO2 R3HDM4 KISS1R STK11 CNN2 MIDN C19orf24 LOC105372235
nsv828366 Chr.19:1094447 - 1105729 on Build GRCh38 Loss GPX4 POLR2E
nsv470102 Chr.19:1046521 - 1152656 on Build GRCh38 Loss ARHGAP45 GPX4 POLR2E ABCA7 SBNO2
nsv469845 Chr.19:951640 - 1144486 on Build GRCh38 Loss RNU6-2 ARHGAP45 ARID3A WDR18 CNN2 TMEM259 GPX4 POLR2E ABCA7 GRIN3B SBNO2 LOC105372235
nsv833704 Chr.19:951641 - 1144486 on Build GRCh38 Gain RNU6-2 ARHGAP45 ARID3A WDR18 CNN2 TMEM259 GPX4 POLR2E ABCA7 GRIN3B SBNO2 LOC105372235
nsv470103 Chr.19:1086044 - 1325151 on Build GRCh38 Gain ARHGAP45 CIRBP-AS1 CBARP LOC102725180 POLR2E ATP5D SBNO2 STK11 GPX4 MIDN CIRBP EFNA2 C19orf24
nsv578215 Chr.19:1095062 - 1124032 on Build GRCh38 Gain GPX4 POLR2E SBNO2
nsv953938 Chr.19:355801 - 1104501 on Build GRCh38 Deletion FGF22 MED16 PRSS57 ARID3A PALM BSG PTBP1 MIR3187 MADCAM1 RNU6-9 GRIN3B THEG RNU6-2 PRTN3 WDR18 GPX4 C2CD4C POLRMT FSTL3 LOC101928450 ARHGAP45 PLPPR3 TMEM259 SHC2 MIR4745 POLR2E ABCA7 ELANE GZMM CDC34 R3HDM4 HCN2 KISS1R CNN2 TPGS1 MISP ODF3L2 AZU1 RNF126 CFD LOC105372235
dgv135n111 Chr.19:1014378 - 1156398 on Build GRCh38 Deletion RNU6-2 ARHGAP45 CNN2 TMEM259 GPX4 POLR2E ABCA7 SBNO2

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More Information


Additional Information:

For this assay, SNP(s) [rs116779126] are located under a primer or probe sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.

Set Membership:

 Intragenic Non-exonic DGV Variation

Panther Classification:

Molecular Function -

DNA-directed RNA polymerase

Gene Ontology Categories:

Function(s) Process(es)


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