Hs04035108_cn

• Gene Symbol: TCEA2
• Assay Reference Genome Location: Chr.20:64051606 on build GRCh38
• Cytoband: 20q13.33

Target Gene Details

• Entrez Gene ID: 6919
• Gene Name: transcription elongation factor A2
• Gene Aliases: TFIIS
• Location: Chr.20:64042350-64072347 on Build GRCh38
• Assay Gene Location: Within Intron 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
TCEA2	XM_011529022.1			XP_011527324.1
	XM_011529027.2			XP_011527329.1
	XM_017028036.1			XP_016883525.1
	XM_017028037.1			XP_016883526.1

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
nsv586727	Chr.20:64048243 - 64052630 on Build GRCh38	Gain	SOX18 TCEA2
nsv470564	Chr.20:64027492 - 64169828 on Build GRCh38	Gain	MYT1 OPRL1 NPBWR2 SOX18 TCEA2 LKAAEAR1 PRPF6 RGS19 LINC00176 MIR6813
nsv586703	Chr.20:63964886 - 64095388 on Build GRCh38	Loss	OPRL1 SOX18 SAMD10 TCEA2 LKAAEAR1 PRPF6 RGS19 LINC00176 MIR6813 ZNF512B
nsv509785	Chr.20:63999103 - 64137376 on Build GRCh38	Insertion	OPRL1 NPBWR2 SOX18 TCEA2 LKAAEAR1 PRPF6 RGS19 LINC00176 MIR6813
nsv428381	Chr.20:63583375 - 64334167 on Build GRCh38	Gain+Loss	MIR1914 ZBTB46 TNFRSF6B SAMD10 LKAAEAR1 MIR941-5 TPD52L2 MIR941-1 MIR941-4 ARFRP1 MIR941-2 ZBTB46-AS1 ZNF512B OPRL1 UCKL1-AS1 MIR941-3 UCKL1 PRPF6 GMEB2 LIME1 MYT1 DNAJC5 MIR647 RTEL1 NPBWR2 LINC00266-1 RTEL1-TNFRSF6B C20orf181 SLC2A4RG STMN3 RGS19 ZGPAT ABHD16B LOC100505771 SOX18 TCEA2 PCMTD2 LINC00176 MIR6813
nsv953310	Chr.20:64017648 - 64160147 on Build GRCh38	Deletion	OPRL1 NPBWR2 SOX18 TCEA2 LKAAEAR1 PRPF6 RGS19 LINC00176 MIR6813
nsv1160691	Chr.20:63943650 - 64055199 on Build GRCh38	Deletion	UCKL1-AS1 SOX18 UCKL1 SAMD10 TCEA2 PRPF6 LINC00176 ZNF512B
nsv586729	Chr.20:64049159 - 64052630 on Build GRCh38	Loss	SOX18 TCEA2
esv2758807	Chr.20:64006869 - 64334167 on Build GRCh38	Gain+Loss	MYT1 OPRL1 NPBWR2 LINC00266-1 SOX18 TCEA2 PCMTD2 LKAAEAR1 PRPF6 RGS19 LINC00176 MIR6813

More Information

Additional Information:

For this assay, SNP(s) [rs79351235] are located under a primer or probe sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.

• Set Membership: Intragenic, Intronic, Non-exonic, DGV Variation

Panther Classification:

Molecular Function -

general transcription factor

Gene Ontology Categories:

Process(es)

DNA-templated transcription, elongation
regulation of DNA-templated transcription, elongation
positive regulation of transcription from RNA polymerase II promoter

Function(s)

DNA binding
protein binding
zinc ion binding