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Gene Symbol
SLC7A4
Assay Reference Genome
Location

Chr.22:21032052 on build GRCh38
Cytoband
22q11.21
Assay ID Hs04085421_cn
Size
Availability Made To Order
Catalog # 4400291
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Assay Details

Target Gene Details

Entrez Gene ID:

 6545

Gene Name:

 solute carrier family 7 member 4

Gene Aliases:

 CAT-4, CAT4, HCAT3, VH

Location:

 Chr.22:21028718-21032558 on Build GRCh38

Assay Gene Location:

 Within Intron 1
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
SLC7A4 NM_004173.2 NP_004164.2
AJ000730.1 CAA04263.1
BC008814.2 AAH08814.1
BC062565.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
dgv7994n54 Chr.22:20559470 - 21111491 on Build GRCh38 Gain SMPD4P1 TMEM191A SLC7A4 MED15 LRRC74B TUBA3FP CRKL THAP7-AS1 SERPIND1 SNAP29 AIFM3 THAP7 P2RX6 MIR649 LOC101928891 P2RX6P LZTR1 PI4KA POM121L4P BCRP2
nsv1065617 Chr.22:20705383 - 21111546 on Build GRCh38 Gain SLC7A4 LRRC74B TUBA3FP CRKL THAP7-AS1 SERPIND1 SNAP29 AIFM3 THAP7 P2RX6 MIR649 LOC101928891 P2RX6P LZTR1 PI4KA BCRP2
esv3893441 Chr.22:20733858 - 21135629 on Build GRCh38 Gain+Loss SLC7A4 LRRC74B TUBA3FP CRKL THAP7-AS1 SERPIND1 SNAP29 AIFM3 THAP7 P2RX6 MIR649 LOC101928891 P2RX6P LZTR1 PI4KA BCRP2
nsv471185 Chr.22:20977267 - 21033678 on Build GRCh38 Loss AIFM3 THAP7 SLC7A4 P2RX6 TUBA3FP THAP7-AS1 LZTR1
nsv834142 Chr.22:20979844 - 21170235 on Build GRCh38 Gain AIFM3 THAP7 SLC7A4 P2RX6 LRRC74B FAM230B MIR649 TUBA3FP THAP7-AS1 P2RX6P LZTR1 BCRP2
nsv834141 Chr.22:20859455 - 21051952 on Build GRCh38 Loss SLC7A4 LRRC74B TUBA3FP CRKL THAP7-AS1 SNAP29 AIFM3 THAP7 P2RX6 MIR649 LOC101928891 P2RX6P LZTR1
esv2763693 Chr.22:20581182 - 21111546 on Build GRCh38 Gain SMPD4P1 TMEM191A SLC7A4 MED15 LRRC74B TUBA3FP CRKL THAP7-AS1 SERPIND1 SNAP29 AIFM3 THAP7 P2RX6 MIR649 LOC101928891 P2RX6P LZTR1 PI4KA POM121L4P BCRP2
nsv3563 Chr.22:21012779 - 21057225 on Build GRCh38 Deletion SLC7A4 P2RX6 LRRC74B MIR649 TUBA3FP P2RX6P
esv3647305 Chr.22:20902577 - 21081487 on Build GRCh38 Gain AIFM3 THAP7 SLC7A4 P2RX6 LRRC74B MIR649 TUBA3FP LOC101928891 CRKL THAP7-AS1 P2RX6P LZTR1
nsv588306 Chr.22:20963144 - 21111491 on Build GRCh38 Gain AIFM3 THAP7 SLC7A4 P2RX6 LRRC74B MIR649 TUBA3FP LOC101928891 THAP7-AS1 P2RX6P LZTR1 BCRP2
nsv588305 Chr.22:20721841 - 21108064 on Build GRCh38 Loss SLC7A4 LRRC74B TUBA3FP CRKL THAP7-AS1 SERPIND1 SNAP29 AIFM3 THAP7 P2RX6 MIR649 LOC101928891 P2RX6P LZTR1 PI4KA BCRP2
esv2678175 Chr.22:20691629 - 21284480 on Build GRCh38 Deletion POM121L8P TMEM191A GGT2 SLC7A4 LRRC74B FAM230B TUBA3FP CRKL THAP7-AS1 SERPIND1 SNAP29 AIFM3 THAP7 P2RX6 MIR649 LOC101928891 P2RX6P LZTR1 PI4KA POM121L4P BCRP2
nsv436864 Chr.22:20346736 - 21559130 on Build GRCh38 Insertion SMPD4P1 GGT2 TMEM191C MED15 FAM230B CRKL SCARF2 SERPIND1 SNAP29 HIC2 RIMBP3C LOC101927859 AIFM3 LOC100996335 P2RX6 MIR649 UBE2L3 P2RX6P USP41 BCRP2 POM121L8P TMEM191A RIMBP3B SLC7A4 LRRC74B TUBA3FP THAP7-AS1 ZNF74 KLHL22 THAP7 PI4KAP2 LOC101928891 LZTR1 PI4KA POM121L4P
esv2760719 Chr.22:21028993 - 21491066 on Build GRCh38 Gain POM121L8P GGT2 RIMBP3B TMEM191C SLC7A4 LRRC74B FAM230B HIC2 LOC100996335 MIR649 PI4KAP2 P2RX6P BCRP2
dgv4483n100 Chr.22:20362634 - 21212930 on Build GRCh38 Gain SMPD4P1 GGT2 MED15 FAM230B CRKL SCARF2 SERPIND1 SNAP29 AIFM3 P2RX6 MIR649 P2RX6P USP41 BCRP2 TMEM191A SLC7A4 LRRC74B TUBA3FP THAP7-AS1 ZNF74 KLHL22 THAP7 LOC101928891 LZTR1 PI4KA POM121L4P
nsv523162 Chr.22:20389246 - 21108064 on Build GRCh38 Loss SMPD4P1 TMEM191A SLC7A4 MED15 LRRC74B TUBA3FP CRKL THAP7-AS1 SCARF2 SERPIND1 SNAP29 ZNF74 KLHL22 AIFM3 THAP7 P2RX6 MIR649 LOC101928891 P2RX6P USP41 LZTR1 PI4KA POM121L4P BCRP2
nsv828960 Chr.22:20953775 - 21057148 on Build GRCh38 Loss AIFM3 THAP7 SLC7A4 P2RX6 LRRC74B MIR649 TUBA3FP LOC101928891 THAP7-AS1 P2RX6P LZTR1

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More Information


Additional Information:

For this assay, SNP(s) [rs146155796] are located under a primer or probe sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.

Set Membership:

 Intragenic Intronic Non-exonic DGV Variation

Panther Classification:

Molecular Function -

amino acid transporter

Gene Ontology Categories:

Function(s) Process(es)


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