Genomic Map
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Target Gene Details
Entrez Gene ID: | 388906 |
Gene Name: | opioid growth factor receptor pseudogene 1 |
Gene Aliases: |
- |
Location: |
Chr.22:42269753-42274862 on Build GRCh38 |
Assay Gene Location: | Within Intron 1 |
| Gene Symbol | Transcript Accession | Exon Location | Assay Transcript Location | Protein ID |
|---|---|---|---|---|
| OGFRP1 | NR_036498.1 | |||
| BC039496.1 | AAH39496.1 |
Target Gene Details
Entrez Gene ID: | 6942 |
Gene Name: | transcription factor 20 |
Gene Aliases: |
AR1, SPBP, TCF-20 |
Location: |
Chr.22:42160013-42283927 on Build GRCh38 |
Assay Gene Location: | Overlaps Intron 1 - Exon 2 |
| Gene Symbol | Transcript Accession | Exon Location | Assay Transcript Location | Protein ID |
|---|---|---|---|---|
| TCF20 | NM_005650.3 | NP_005641.1 | ||
| XM_006724313.3 | XP_006724376.1 | |||
| XM_011530353.2 | XP_011528655.1 | |||
| XM_011530354.2 | XP_011528656.1 | |||
| KF851355.1 |
Target Copy Number Variation Details
DGV Version: |
Release date: 2016-05-15, GRCh GRCh38 |
| Target Variation |
Location | CNV Subtype |
Genes |
|---|---|---|---|
| nsv829244 | Chr.22:42253613 - 42380506 on Build GRCh38 | Gain |
 NFAM1
LINC01315
OGFRP1
TCF20
|
| nsv834211 | Chr.22:42209111 - 42386001 on Build GRCh38 | Loss |
NFAM1
LINC01315
OGFRP1
TCF20
|
| nsv955165 | Chr.22:42270495 - 42344594 on Build GRCh38 | Deletion |
OGFRP1
TCF20
|
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Additional Information:
For this assay, SNP(s) [rs535207338] are located under a primer or probe sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.
Set Membership: |
Intragenic
Intronic
Non-exonic
DGV Variation
|
Panther Classification:
Gene Ontology Categories:
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