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See other RANBP1 CNV Assays ›
Gene Symbol
RANBP1
Assay Reference Genome
Location

Chr.22:20125069 on build GRCh38
Cytoband
22q11.21
Assay ID Hs04089003_cn
Size
Availability Made To Order
Catalog # 4400291
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Assay Details

Target Gene Details

Entrez Gene ID:

 5902

Gene Name:

 RAN binding protein 1

Gene Aliases:

 HTF9A

Location:

 Chr.22:20115938-20127357 on Build GRCh38

Assay Gene Location:

 Within Intron 5
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
RANBP1 NM_001278639.1 NP_001265568.1
NM_001278640.1 NP_001265569.1
NM_001278641.1 NP_001265570.1
NM_002882.3 NP_002873.1
XM_011530289.2 XP_011528591.1
XM_011530290.2 XP_011528592.1
XM_011530291.2 XP_011528593.1
XM_017028890.1 XP_016884379.1
XM_017028891.1 XP_016884380.1
XM_017028892.1 XP_016884381.1
AK094410.1 1 931
AK097659.1
AK223506.1 BAD97226.1
AK293502.1
AK300927.1
BG717186.1
BI916757.1
CA489474.1
CR456556.1 CAG30442.1
D38076.1 BAA07269.1
X83617.1 CAA58592.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
dgv726n67 Chr.22:20070444 - 20324465 on Build GRCh38 Gain LINC00896 RTN4R DGCR8 MIR1306 MIR1286 CCDC188 LOC440792 DGCR6L MIR3618 RANBP1 MIR6816 TRMT2A LOC284865 ZDHHC8
esv3647284 Chr.22:19985583 - 20137122 on Build GRCh38 Gain DGCR8 MIR1306 MIR185 MIR3618 TRMT2A ARVCF TANGO2 ZDHHC8 RANBP1 MIR6816
esv3893434 Chr.22:19470889 - 20343372 on Build GRCh38 Gain LINC00896 MIR1306 CCDC188 LOC440792 DGCR6L RANBP1 MIR185 TRMT2A UFD1L ARVCF LINC00895 TBX1 LOC284865 MIR4761 RTN4R DGCR8 CDC45 MIR1286 TXNRD2 LOC101927859 MIR3618 TANGO2 CLDN5 MIR6816 SEPT5 GP1BB C22orf29 GNB1L ZDHHC8 SEPT5-GP1BB COMT
esv2758825 Chr.22:20038970 - 20321924 on Build GRCh38 Loss LINC00896 RTN4R DGCR8 MIR1306 MIR1286 CCDC188 LOC440792 DGCR6L MIR3618 TANGO2 RANBP1 MIR6816 TRMT2A LOC284865 ZDHHC8
nsv828939 Chr.22:19696032 - 20324465 on Build GRCh38 Loss LINC00896 MIR1306 CCDC188 LOC440792 DGCR6L RANBP1 MIR185 TRMT2A ARVCF TBX1 LOC284865 MIR4761 RTN4R DGCR8 MIR1286 TXNRD2 MIR3618 TANGO2 MIR6816 SEPT5 GP1BB C22orf29 GNB1L ZDHHC8 SEPT5-GP1BB COMT
nsv828938 Chr.22:19691069 - 20324465 on Build GRCh38 Gain LINC00896 MIR1306 CCDC188 LOC440792 DGCR6L RANBP1 MIR185 TRMT2A ARVCF TBX1 LOC284865 MIR4761 RTN4R DGCR8 MIR1286 TXNRD2 MIR3618 TANGO2 MIR6816 SEPT5 GP1BB C22orf29 GNB1L ZDHHC8 SEPT5-GP1BB COMT
dgv4480n100 Chr.22:20069620 - 20262667 on Build GRCh38 Gain LINC00896 RTN4R DGCR8 MIR1306 MIR1286 CCDC188 MIR3618 TRMT2A LOC284865 ZDHHC8 RANBP1 MIR6816
dgv4481n100 Chr.22:20114567 - 20291605 on Build GRCh38 Gain LINC00896 RTN4R MIR1286 CCDC188 TRMT2A LOC284865 ZDHHC8 RANBP1 MIR6816
nsv471183 Chr.22:20018517 - 20319470 on Build GRCh38 Loss LINC00896 RTN4R DGCR8 MIR1306 MIR1286 CCDC188 LOC440792 DGCR6L MIR3618 TANGO2 RANBP1 MIR6816 MIR185 TRMT2A LOC284865 ZDHHC8
nsv953027 Chr.22:20085378 - 20303977 on Build GRCh38 Deletion LINC00896 RTN4R DGCR8 MIR1306 MIR1286 CCDC188 LOC440792 MIR3618 RANBP1 MIR6816 TRMT2A LOC284865 ZDHHC8
nsv834133 Chr.22:20029363 - 20176708 on Build GRCh38 Loss DGCR8 MIR1306 CCDC188 MIR185 MIR3618 TRMT2A TANGO2 ZDHHC8 RANBP1 MIR6816
dgv7983n54 Chr.22:19762002 - 20321870 on Build GRCh38 Gain LINC00896 RTN4R DGCR8 MIR1306 MIR1286 CCDC188 TXNRD2 LOC440792 DGCR6L MIR3618 TANGO2 RANBP1 MIR6816 MIR185 C22orf29 TRMT2A ARVCF GNB1L TBX1 LOC284865 ZDHHC8 COMT MIR4761

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More Information


Additional Information:

For this assay, SNP(s) [rs73391907] are located under a primer or probe sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.

Set Membership:

 Intragenic Intronic Non-exonic DGV Variation

Panther Classification:

Molecular Function -

scaffold/adaptor protein

Gene Ontology Categories:

Function(s) Process(es)


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