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See other RANBP1 CNV Assays ›
Gene Symbol
RANBP1
Assay Reference Genome
Location

Chr.22:20125069 on build GRCh38
Cytoband
22q11.21
Assay ID Hs04089003_cn
Size
Availability Made To Order
Catalog # 4400291
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Assay Details

Target Gene Details

Entrez Gene ID:

 5902

Gene Name:

 RAN binding protein 1

Gene Aliases:

 HTF9A

Location:

 Chr.22:20115938-20127357 on Build GRCh38

Assay Gene Location:

 Within Intron 5
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
RANBP1 NM_001278639.1 NP_001265568.1
NM_001278640.1 NP_001265569.1
NM_001278641.1 NP_001265570.1
NM_002882.3 NP_002873.1
XM_011530289.2 XP_011528591.1
XM_011530290.2 XP_011528592.1
XM_011530291.2 XP_011528593.1
XM_017028890.1 XP_016884379.1
XM_017028891.1 XP_016884380.1
XM_017028892.1 XP_016884381.1
AK094410.1 1 931
AK097659.1
AK223506.1 BAD97226.1
AK293502.1
AK300927.1
BG717186.1
BI916757.1
CA489474.1
CR456556.1 CAG30442.1
D38076.1 BAA07269.1
X83617.1 CAA58592.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
dgv726n67 Chr.22:20070444 - 20324465 on Build GRCh38 Gain LOC440792 DGCR6L MIR3618 ZDHHC8 LOC284865 DGCR8 LINC00896 RANBP1 MIR1286 CCDC188 MIR6816 MIR1306 TRMT2A RTN4R
esv3893434 Chr.22:19470889 - 20343372 on Build GRCh38 Gain MIR4761 MIR3618 COMT CDC45 ZDHHC8 TBX1 LOC284865 DGCR8 MIR185 LINC00895 TANGO2 CLDN5 TXNRD2 ARVCF LINC00896 RANBP1 MIR1286 GP1BB RTN4R LOC440792 DGCR6L GNB1L LOC101927859 SEPT5-GP1BB C22orf29 UFD1L SEPT5 CCDC188 MIR6816 MIR1306 TRMT2A
esv3647284 Chr.22:19985583 - 20137122 on Build GRCh38 Gain MIR185 TANGO2 MIR3618 ARVCF ZDHHC8 RANBP1 MIR6816 DGCR8 MIR1306 TRMT2A
nsv828938 Chr.22:19691069 - 20324465 on Build GRCh38 Gain MIR4761 MIR3618 COMT ZDHHC8 TBX1 LOC284865 DGCR8 MIR185 TANGO2 TXNRD2 ARVCF LINC00896 RANBP1 MIR1286 GP1BB RTN4R LOC440792 DGCR6L GNB1L SEPT5-GP1BB C22orf29 SEPT5 CCDC188 MIR6816 MIR1306 TRMT2A
nsv828939 Chr.22:19696032 - 20324465 on Build GRCh38 Loss MIR4761 MIR3618 COMT ZDHHC8 TBX1 LOC284865 DGCR8 MIR185 TANGO2 TXNRD2 ARVCF LINC00896 RANBP1 MIR1286 GP1BB RTN4R LOC440792 DGCR6L GNB1L SEPT5-GP1BB C22orf29 SEPT5 CCDC188 MIR6816 MIR1306 TRMT2A
esv2758825 Chr.22:20038970 - 20321924 on Build GRCh38 Loss LOC440792 DGCR6L MIR3618 ZDHHC8 LOC284865 DGCR8 TANGO2 LINC00896 RANBP1 MIR1286 CCDC188 MIR6816 MIR1306 TRMT2A RTN4R
dgv4480n100 Chr.22:20069620 - 20262667 on Build GRCh38 Gain MIR3618 ZDHHC8 LINC00896 RANBP1 MIR1286 LOC284865 CCDC188 MIR6816 DGCR8 MIR1306 TRMT2A RTN4R
dgv4481n100 Chr.22:20114567 - 20291605 on Build GRCh38 Gain ZDHHC8 LINC00896 RANBP1 MIR1286 LOC284865 CCDC188 MIR6816 TRMT2A RTN4R
nsv471183 Chr.22:20018517 - 20319470 on Build GRCh38 Loss LOC440792 DGCR6L MIR3618 ZDHHC8 LOC284865 DGCR8 MIR185 TANGO2 LINC00896 RANBP1 MIR1286 CCDC188 MIR6816 MIR1306 TRMT2A RTN4R
dgv7983n54 Chr.22:19762002 - 20321870 on Build GRCh38 Gain LOC440792 DGCR6L MIR4761 MIR3618 COMT ZDHHC8 TBX1 LOC284865 DGCR8 GNB1L MIR185 TANGO2 TXNRD2 ARVCF C22orf29 LINC00896 RANBP1 MIR1286 CCDC188 MIR6816 MIR1306 TRMT2A RTN4R
nsv834133 Chr.22:20029363 - 20176708 on Build GRCh38 Loss MIR185 TANGO2 MIR3618 ZDHHC8 RANBP1 CCDC188 MIR6816 DGCR8 MIR1306 TRMT2A
nsv953027 Chr.22:20085378 - 20303977 on Build GRCh38 Deletion LOC440792 MIR3618 ZDHHC8 LOC284865 DGCR8 LINC00896 RANBP1 MIR1286 CCDC188 MIR6816 MIR1306 TRMT2A RTN4R

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More Information


Additional Information:

For this assay, SNP(s) [rs73391907] are located under a primer or probe sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.

Set Membership:

 Intragenic Intronic Non-exonic DGV Variation

Panther Classification:

Molecular Function -

scaffold/adaptor protein

Gene Ontology Categories:

Function(s) Process(es)


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