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See other TTLL10 CNV Assays ›
Gene Symbol
TTLL10
Assay Reference Genome
Location

Chr.1:1174448 on build GRCh38
Cytoband
1p36.33
Assay ID Hs04198648_cn
Size
Availability Made To Order
Catalog # 4400291
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Assay Details

Target Gene Details

Entrez Gene ID:

 254173

Gene Name:

 tubulin tyrosine ligase like 10

Gene Aliases:

 TTLL5

Location:

 Chr.1:1173709-1197936 on Build GRCh38

Assay Gene Location:

 Overlaps Intron 2 - Intron 3
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
TTLL10 NM_001130045.1 NP_001123517.1
XM_011541177.2 XP_011539479.1
AK124125.1 BAC85781.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
nsv482937 Chr.1:10001 - 2368561 on Build GRCh38 Loss MIR429 MIR200B PERM1 MIR6723 MMP23B DVL1 TMEM52 LOC100132287 LOC105378948 WASH7P TMEM88B LOC102724312 LINC00115 LOC107985729 ATAD3B FAAP20 VWA1 SSU72 SDF4 GABRD TNFRSF4 OR4F29 MIR6859-2 TNFRSF18 MRPL20 OR4F16 PRKCZ ACAP3 MIR1302-2 SKI MIB2 MIR6808 LOC100129534 OR4F5 FAM87B CCNL2 CPTP TAS1R3 LOC100133331 MIR6727 LOC105378589 LOC101928626 UBE2J2 ATAD3C DDX11L1 TTLL10 CFAP74 ATAD3A LINC01128 KLHL17 LOC100288069 NADK LOC102725121 MXRA8 LINC01342 LOC105378592 TTLL10-AS1 SCNN1D PLEKHN1 SAMD11 MIR200A B3GALT6 FAM138A LOC100287934 SLC35E2 FAM41C LOC148413 SLC35E2B MIR6726 NOC2L CPSF3L CDK11B LOC284600 GNB1 TMEM240 LOC100130417 C1orf159 MTND2P28 MMP23A RNF223 CDK11A LOC107984841 LOC105378947 MORN1 HES4 AURKAIP1 LOC105378591 LOC105378949 ISG15 PUSL1 LOC100288175 LOC107985728 AGRN MTND1P23 ANKRD65 FNDC10 FAM132A LOC100134822 CALML6 LOC100506504 MIR6859-1 LOC729737
nsv544954 Chr.1:1139244 - 1186414 on Build GRCh38 Loss TTLL10 MIR429 MIR200B LINC01342 TTLL10-AS1 MIR200A
nsv1003578 Chr.1:1068249 - 1282706 on Build GRCh38 Gain SCNN1D MIR429 MIR200B RNF223 LINC01342 LOC105378948 MIR200A FAM132A B3GALT6 TTLL10 SDF4 TNFRSF4 TTLL10-AS1 TNFRSF18 C1orf159 UBE2J2
nsv544947 Chr.1:1070426 - 1306704 on Build GRCh38 Loss SCNN1D MIR429 MIR200B RNF223 LINC01342 ACAP3 MIR200A FAM132A B3GALT6 TTLL10 SDF4 TNFRSF4 MIR6726 TTLL10-AS1 TNFRSF18 C1orf159 UBE2J2
nsv544956 Chr.1:1171093 - 1241217 on Build GRCh38 Loss TTLL10 SDF4 TNFRSF4 TTLL10-AS1 TNFRSF18 B3GALT6
nsv428334 Chr.1:874371 - 1220569 on Build GRCh38 Gain MIR429 MIR200B PERM1 RNF223 LINC01342 LOC105378948 HES4 TTLL10-AS1 ISG15 LOC100288175 LOC107985728 AGRN PLEKHN1 SAMD11 MIR200A TTLL10 SDF4 TNFRSF4 FAM41C NOC2L LOC284600 KLHL17 LOC100130417 TNFRSF18 C1orf159
nsv1160772 Chr.1:1027585 - 1333467 on Build GRCh38 Duplication MIR429 MIR200B RNF223 LINC01342 ACAP3 LOC105378948 CPTP TAS1R3 TTLL10-AS1 PUSL1 MIR6727 LOC100288175 UBE2J2 AGRN SCNN1D MIR200A FAM132A B3GALT6 TTLL10 SDF4 TNFRSF4 MIR6726 CPSF3L TNFRSF18 C1orf159
nsv10161 Chr.1:776731 - 1777210 on Build GRCh38 Gain+Loss MIR429 MIR200B PERM1 MMP23B MXRA8 LINC01342 DVL1 LOC105378948 TMEM88B LOC102724312 TTLL10-AS1 LINC00115 SCNN1D LOC107985729 ATAD3B PLEKHN1 VWA1 SAMD11 MIR200A SSU72 B3GALT6 LOC100287934 SLC35E2 SDF4 TNFRSF4 FAM41C LOC148413 SLC35E2B MIR6726 NOC2L CPSF3L CDK11B LOC284600 TMEM240 LOC100130417 TNFRSF18 C1orf159 MRPL20 MMP23A RNF223 ACAP3 MIB2 CDK11A MIR6808 FAM87B HES4 CCNL2 AURKAIP1 CPTP TAS1R3 ISG15 PUSL1 MIR6727 LOC100288175 UBE2J2 LOC107985728 AGRN ATAD3C ANKRD65 FNDC10 FAM132A TTLL10 ATAD3A LINC01128 KLHL17 LOC100288069 NADK
nsv517709 Chr.1:817186 - 1275912 on Build GRCh38 Gain+Loss MIR429 MIR200B PERM1 RNF223 LINC01342 LOC105378948 FAM87B HES4 TTLL10-AS1 LINC00115 ISG15 LOC100288175 UBE2J2 LOC107985728 AGRN PLEKHN1 SAMD11 MIR200A FAM132A B3GALT6 TTLL10 SDF4 TNFRSF4 FAM41C NOC2L LOC284600 LINC01128 KLHL17 LOC100130417 TNFRSF18 C1orf159
nsv950452 Chr.1:1106921 - 1637538 on Build GRCh38 Deletion MIR429 MIR200B MMP23B MXRA8 LINC01342 DVL1 ACAP3 MIB2 TMEM88B MIR6808 LOC102724312 CCNL2 AURKAIP1 CPTP TAS1R3 TTLL10-AS1 PUSL1 MIR6727 UBE2J2 SCNN1D ATAD3C LOC107985729 ATAD3B VWA1 ANKRD65 MIR200A FNDC10 SSU72 FAM132A B3GALT6 TTLL10 SDF4 TNFRSF4 LOC148413 ATAD3A MIR6726 CPSF3L CDK11B TMEM240 TNFRSF18 C1orf159 MRPL20
dgv2n67 Chr.1:877618 - 1426500 on Build GRCh38 Gain MIR429 MIR200B PERM1 RNF223 MXRA8 LINC01342 DVL1 ACAP3 LOC105378948 TMEM88B MIR6808 HES4 CCNL2 AURKAIP1 CPTP TAS1R3 TTLL10-AS1 ISG15 PUSL1 MIR6727 LOC100288175 UBE2J2 LOC107985728 AGRN SCNN1D PLEKHN1 ANKRD65 SAMD11 MIR200A FAM132A B3GALT6 TTLL10 SDF4 TNFRSF4 LOC148413 MIR6726 NOC2L CPSF3L LOC284600 KLHL17 LOC100130417 TNFRSF18 C1orf159 MRPL20
nsv1160644 Chr.1:939652 - 1220663 on Build GRCh38 Deletion AGRN MIR429 MIR200B PERM1 RNF223 LINC01342 PLEKHN1 SAMD11 LOC105378948 MIR200A TTLL10 SDF4 TNFRSF4 HES4 NOC2L TTLL10-AS1 ISG15 KLHL17 TNFRSF18 C1orf159 LOC100288175
nsv509257 Chr.1:1151955 - 1189470 on Build GRCh38 Insertion TTLL10 MIR429 MIR200B TTLL10-AS1 MIR200A
nsv469848 Chr.1:1146082 - 1322235 on Build GRCh38 Gain SCNN1D MIR429 MIR200B ACAP3 MIR200A FAM132A B3GALT6 TTLL10 SDF4 TNFRSF4 MIR6726 CPSF3L TTLL10-AS1 PUSL1 MIR6727 TNFRSF18 UBE2J2

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More Information


Additional Information:

For this assay, SNP(s) [rs72894004] are located under a primer or probe sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.

Set Membership:

 Intragenic Intronic Non-exonic DGV Variation

Gene Ontology Categories:

Function(s) Process(es)


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