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See other LOC105371049 CNV Assays ›
Gene Symbol
LOC105371049
Assay Reference Genome
Location

Chr.16:2093131 on build GRCh38
Cytoband
16p13.3
Assay ID Hs04457883_cn
Size
Availability Made To Order
Catalog # 4400291
Price
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Assay Details

Target Gene Details

Entrez Gene ID:

 105371049

Gene Name:

 uncharacterized LOC105371049

Gene Aliases:

 -

Location:

 Chr.16:2091436-2095017 on Build GRCh38

Assay Gene Location:

 Within Intron 2
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
LOC105371049 NR_135175.1
BM824397.1

Target Gene Details

Entrez Gene ID:

 5310

Gene Name:

 polycystin 1, transient receptor potential channel interacting

Gene Aliases:

 PBP, Pc-1, TRPP1

Location:

 Chr.16:2088708-2135898 on Build GRCh38

Assay Gene Location:

 Overlaps Intron 42 - Exon 43
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
PKD1 NM_000296.3 NP_000287.3
NM_001009944.2 NP_001009944.2
XM_005255370.3 XP_005255427.1
XM_011522528.2 XP_011520830.1
XM_011522529.2 XP_011520831.1
XM_011522530.2 XP_011520832.1
XM_011522532.2 XP_011520834.1
XM_011522534.2 XP_011520836.1
XM_011522535.2 XP_011520837.1
XM_011522537.2 XP_011520839.1
XM_017023285.1 XP_016878774.1
AB209025.1 BAD92262.1
AB209675.1 BAD92912.1
L33243.1 AAC37576.1
U24497.1 AAC50128.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
dgv4862n54 Chr.16:2088868 - 2095128 on Build GRCh38 Loss LOC105371049 PKD1 MIR1225
esv2422427 Chr.16:10001 - 2723164 on Build GRCh38 Duplication SOX8 POLR3K BAIAP3 AMDHD2 TPSB2 HBM HS3ST6 MSLN RAB40C GNPTG LOC105371038 PGP NHLRC4 PDIA2 HN1L RGS11 TSR3 LOC100287175 NDUFB10 KCTD5 LMF1 FAM234A MIR6767 LOC107984876 CASKIN1 TRAF7 LOC729652 HBA1 LINC00254 NTN3 RHOT2 SSTR5-AS1 DNASE1L2 LOC101929280 CCNF NPW WFIKKN1 HBZ RPUSD1 TPSAB1 JMJD8 TSC2 SNHG19 E4F1 SNRNP25 HBQ1 RPL3L CCDC78 MIR6859-4 MEIOB MAPK8IP3 FLJ42627 LOC107987233 CCDC154 RHBDF1 RPL23AP5 MLST8 MIR6768 PTX4 FAHD1 CLCN7 PIGQ TMEM204 MIR1225 LOC105371184 TELO2 MRPL28 PDPK1 SYNGR3 RAB11FIP3 WASIR2 ERVK13-1 FAM173A MIR3176 MIR5587 MIR4717 HAGH NARFL RAB26 CRAMP1 TMEM8A FBXL16 NME4 METRN PRR25 EME2 LOC106660606 NPRL3 STUB1 CACNA1H DDX11L10 CAPN15 NUBP2 WDR24 PRSS29P NTHL1 SNORD60 ARHGDIG LOC100134368 ATP6V0C NOXO1 MIR4516 MIR3178 ECI1 NME3 MIR6511B1 PRSS27 MIR3177 TBC1D24 LOC652276 TPSD1 C1QTNF8 MSRB1 SLC9A3R2 RNPS1 MIR3677 TPSG1 LOC105371047 UBE2I MIR662 RPS2 HBA2 MIR940 CEMP1 C16orf59 RHBDL1 ABCA17P PKD1 IFT140 TBL3 WDR90 BRICD5 GNG13 C16orf91 GFER SNHG9 MRPS34 LOC105371045 SNORA78 LMF1-AS1 ABCA3 LUC7L SSTR5 RNF151 MIR3180-5 LOC105371046 LOC105371049 UNKL AXIN1 SNORA64 MCRIP2 CHTF18 MPG ZNF598 DECR2 LINC00235 METTL26 SNORA10 SPSB3 HAGHL IGFALS PRR35
dgv4859n54 Chr.16:1971892 - 2264400 on Build GRCh38 Loss TSC2 RAB26 SNHG19 PKD1 E4F1 TBL3 BRICD5 GFER PGP NTHL1 SNORD60 NOXO1 MLST8 MIR4516 MIR3180-5 ECI1 MIR6511B1 LOC105371049 CASKIN1 TRAF7 MIR1225 SYNGR3 SLC9A3R2 RNPS1 ZNF598 DNASE1L2 NPW
nsv952901 Chr.16:1888800 - 2135899 on Build GRCh38 Deletion TSC2 MIR6511B1 LOC105371049 PKD1 TBL3 MIR1225 SNORA64 GFER RPL3L HS3ST6 SNHG9 MSRB1 SYNGR3 SLC9A3R2 SNORA78 ZNF598 NTHL1 NPW RPS2 RNF151 NDUFB10 NOXO1 SNORA10 MIR4516
nsv1160329 Chr.16:1961727 - 2128574 on Build GRCh38 Deletion TSC2 MIR6511B1 LOC105371049 PKD1 TBL3 MIR1225 SNORA64 GFER SNHG9 SYNGR3 SLC9A3R2 SNORA78 ZNF598 NTHL1 NPW RPS2 RNF151 NDUFB10 NOXO1 SNORA10
dgv4861n54 Chr.16:2083900 - 2246850 on Build GRCh38 Loss ECI1 TSC2 RAB26 SNHG19 MIR6511B1 LOC105371049 PKD1 E4F1 CASKIN1 TRAF7 MIR1225 BRICD5 PGP DNASE1L2 SNORD60 MLST8 MIR4516 MIR3180-5
nsv571190 Chr.16:2055054 - 2200730 on Build GRCh38 Loss TSC2 RAB26 SNHG19 MIR6511B1 LOC105371049 PKD1 CASKIN1 SNORD60 TRAF7 MIR1225 MIR4516 MIR3180-5
nsv1052260 Chr.16:2074546 - 2629655 on Build GRCh38 Gain TSC2 RAB26 ABCA17P SNHG19 PKD1 E4F1 AMDHD2 BRICD5 LOC106660606 PGP ABCA3 SNORD60 ATP6V0C MLST8 MIR4516 MIR3180-5 MIR6768 MIR3178 ECI1 MIR6511B1 LOC105371049 MIR6767 CASKIN1 TRAF7 MIR1225 LOC729652 TBC1D24 LOC652276 NTN3 PDPK1 RNPS1 MIR3677 DNASE1L2 CCNF MIR4717 MIR940 CEMP1 C16orf59
nsv471381 Chr.16:2088710 - 2135898 on Build GRCh38 Gain TSC2 MIR6511B1 LOC105371049 PKD1 MIR1225 MIR4516
esv26918 Chr.16:2091142 - 2123135 on Build GRCh38 Gain+Loss MIR6511B1 LOC105371049 PKD1

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More Information


Set Membership:

 Intragenic Intronic Non-exonic DGV Variation

Panther Classification:

Molecular Function -

ion channel

Gene Ontology Categories:

Function(s) Process(es)


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