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See other SMYD1 CNV Assays ›
Gene Symbol
SMYD1
Assay Reference Genome
Location

Chr.2:88076059 on build GRCh38
Cytoband
2p11.2
Assay ID Hs04634568_cn
Size
Availability Made To Order
Catalog # 4400291
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Assay Details

Target Gene Details

Entrez Gene ID:

 150572

Gene Name:

 SET and MYND domain containing 1

Gene Aliases:

 BOP, KMT3D, ZMYND18, ZMYND22

Location:

 Chr.2:88067780-88113384 on Build GRCh38

Assay Gene Location:

 Within Intron 1
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
SMYD1 NM_198274.3 NP_938015.1
XM_005264156.2 XP_005264213.1
AK091724.1 BAC03732.1
AL832035.1 CAI46139.1
AY518933.1 AAT44535.1
BC126191.1
BX647878.1 CAI46077.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
dgv61n16 Chr.2:87343737 - 90254660 on Build GRCh38 Deletion LOC101928371 LOC107985911 IGKV1D-13 PLGLB2 IGKV1D-8 LOC101927050 RGPD2 IGKV3-20 MIR4780 IGKC ANKRD36BP2 SMYD1 TEX37 IGKV2-26 RPIA IGKV3D-15 MIR4436A LINC00152 IGKV2-29 FOXI3 LOC101928403 IGKV2-24 IGKV1-5 LOC730268 FABP1 KRCC1 IGK THNSL2 EIF2AK3 MIR4435-1
nsv1072005 Chr.2:87360367 - 90256528 on Build GRCh38 Deletion LOC101928371 LOC107985911 IGKV1D-13 PLGLB2 IGKV1D-8 LOC101927050 RGPD2 IGKV3-20 MIR4780 IGKC ANKRD36BP2 SMYD1 TEX37 IGKV2-26 RPIA IGKV3D-15 MIR4436A LINC00152 IGKV2-29 FOXI3 LOC101928403 IGKV2-24 IGKV1-5 LOC730268 FABP1 KRCC1 IGK THNSL2 EIF2AK3 MIR4435-1
dgv6947n54 Chr.2:87815738 - 88850700 on Build GRCh38 Gain LOC101928371 FOXI3 LOC101928403 RGPD2 MIR4780 FABP1 KRCC1 ANKRD36BP2 THNSL2 SMYD1 TEX37 EIF2AK3 RPIA MIR4436A
nsv1148611 Chr.2:87360364 - 90256525 on Build GRCh38 Deletion LOC101928371 LOC107985911 IGKV1D-13 PLGLB2 IGKV1D-8 LOC101927050 RGPD2 IGKV3-20 MIR4780 IGKC ANKRD36BP2 SMYD1 TEX37 IGKV2-26 RPIA IGKV3D-15 MIR4436A LINC00152 IGKV2-29 FOXI3 LOC101928403 IGKV2-24 IGKV1-5 LOC730268 FABP1 KRCC1 IGK THNSL2 EIF2AK3 MIR4435-1
nsv582384 Chr.2:87987149 - 88773214 on Build GRCh38 Loss LOC101928371 FOXI3 LOC101928403 RGPD2 MIR4780 FABP1 KRCC1 ANKRD36BP2 THNSL2 SMYD1 TEX37 EIF2AK3 RPIA
nsv582383 Chr.2:87915816 - 88527080 on Build GRCh38 Gain FOXI3 RGPD2 MIR4780 FABP1 KRCC1 THNSL2 SMYD1 TEX37
nsv582386 Chr.2:88035188 - 89208087 on Build GRCh38 Loss LOC101928371 FOXI3 LOC101928403 IGKV2-24 IGKV1-5 IGKV3-20 MIR4780 FABP1 IGKC KRCC1 IGK ANKRD36BP2 THNSL2 SMYD1 TEX37 IGKV2-26 EIF2AK3 RPIA MIR4436A

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More Information


Additional Information:

For this assay, SNP(s) [rs116827275] are located under a primer or probe sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.

Set Membership:

 Intragenic Intronic Non-exonic DGV Variation

Panther Classification:

Molecular Function -

histone modifying enzyme

Gene Ontology Categories:

Function(s) Process(es)


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