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See other APBA2 CNV Assays ›
Gene Symbol
APBA2
Assay Reference Genome
Location

Chr.15:28929703 on build GRCh38
Cytoband
15q13.1
Assay ID Hs05339556_cn
Size
Availability Made To Order
Catalog # 4400291
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Assay Details

Target Gene Details

Entrez Gene ID:

 321

Gene Name:

 amyloid beta precursor protein binding family A member 2

Gene Aliases:

 D15S1518E, HsT16821, LIN-10, MGC:14091, MINT2, X11-BETA, X11L

Location:

 Chr.15:28885479-29118315 on Build GRCh38

Assay Gene Location:

 Within Intron 5
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
APBA2 NM_001130414.1 NP_001123886.1
NM_005503.3 NP_005494.2
XM_011521488.2 XP_011519790.1
XM_011521489.2 XP_011519791.1
XM_011521490.2 XP_011519792.1
XM_011521493.2 XP_011519795.1
XM_011521494.2 XP_011519796.1
XM_017022101.1 XP_016877590.1
XM_017022102.1 XP_016877591.1
XM_017022103.1 XP_016877592.1
XM_017022104.1 XP_016877593.1
XM_017022105.1 XP_016877594.1
XM_017022106.1 XP_016877595.1
XM_017022107.1 XP_016877596.1
XM_017022108.1 XP_016877597.1
XM_017022109.1 XP_016877598.1
XM_017022110.1 XP_016877599.1
XM_017022113.1 XP_016877602.1
XM_017022114.1 XP_016877603.1
AF047348.1 AAC39767.1
AK310413.1
BC082986.1 AAH82986.1
BX332225.2

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
nsv1040778 Chr.15:28689598 - 30515727 on Build GRCh38 Loss FAM189A1 ULK4P3 PDCD6IPP2 GOLGA8R APBA2 NSMCE3 LOC100289656 LOC107984752 TJP1 DKFZP434L187 LOC105370746 WHAMMP2 GOLGA6L7P CHRFAM7A GOLGA8J GOLGA8T LOC100130111 GOLGA8M LOC105370751 LOC101060569
nsv527255 Chr.15:28754022 - 30074044 on Build GRCh38 Gain TJP1 FAM189A1 WHAMMP2 PDCD6IPP2 GOLGA6L7P APBA2 NSMCE3 LOC100130111 LOC100289656 LOC107984752
nsv1039798 Chr.15:28724126 - 30158154 on Build GRCh38 Gain FAM189A1 ULK4P3 PDCD6IPP2 APBA2 NSMCE3 LOC100289656 LOC107984752 TJP1 WHAMMP2 GOLGA6L7P GOLGA8J GOLGA8T LOC100130111
nsv522597 Chr.15:28724519 - 30074044 on Build GRCh38 Loss TJP1 FAM189A1 WHAMMP2 PDCD6IPP2 GOLGA6L7P APBA2 NSMCE3 LOC100130111 LOC100289656 LOC107984752
nsv516384 Chr.15:28920744 - 28996217 on Build GRCh38 Loss APBA2
nsv568662 Chr.15:27726493 - 29056123 on Build GRCh38 Gain GOLGA8F LOC101929047 PDCD6IPP2 HERC2P11 LOC645202 MIR4509-3 APBA2 LOC100289656 LOC107984752 WHAMMP2 GOLGA6L7P HERC2P9 GOLGA8G OCA2 HERC2 GOLGA8M MIR4509-2 LOC100132202

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More Information


Additional Information:

For this assay, SNP(s) [rs115433553] are located under a primer or probe sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.

Set Membership:

 Intragenic Intronic Non-exonic DGV Variation

Panther Classification:

Gene Ontology Categories:

Function(s) Process(es)


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