Hs05341027_cn

• Gene Symbol: AVEN
• Assay Reference Genome Location: Chr.15:34041500 on build GRCh38
• Cytoband: 15q14

Target Gene Details

• Entrez Gene ID: 57099
• Gene Name: apoptosis and caspase activation inhibitor
• Gene Aliases: PDCD12
• Location: Chr.15:33858602-34074877 on Build GRCh38
• Assay Gene Location: Within Intron 3

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
AVEN	XM_011521818.2			XP_011520120.1
	XM_011521819.2			XP_011520121.1

Target Gene Details

• Entrez Gene ID: 1133
• Gene Name: cholinergic receptor muscarinic 5
• Gene Aliases: HM5
• Location: Chr.15:33968314-34065094 on Build GRCh38
• Assay Gene Location: Within Intron 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
CHRM5	NM_001320917.1			NP_001307846.1
	NM_012125.3			NP_036257.1
	AB084282.1			BAB91222.1
	AK095198.1
	BC041805.1			AAH41805.1

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
nsv471235	Chr.15:33743328 - 34129750 on Build GRCh38	Gain	AVEN PGBD4 EMC7 CHRM5 RYR3
nsv1052620	Chr.15:32612402 - 34538731 on Build GRCh38	Gain	AVEN SLC12A6 NUTM1 MIR1233-2 TMCO5B LOC101928134 GOLGA8A GOLGA8B MIR1233-1 EMC4 ARHGAP11A FMN1 LOC101928042 PGBD4 LPCAT4 EMC7 LOC100131315 SCG5 NOP10 CHRM5 GREM1 RYR3 KATNBL1 LOC105370757
esv33337	Chr.15:31689863 - 34575097 on Build GRCh38	Gain+Loss	WHAMMP1 AVEN SLC12A6 NUTM1 TMCO5B CHRNA7 LOC100996255 MIR1233-1 EMC4 ARHGAP11A FMN1 LOC101928042 PGBD4 LPCAT4 EMC7 LOC100131315 GOLGA8N CHRM5 GREM1 KATNBL1 LOC100653133 MIR1233-2 GOLGA8K LOC101928134 LOC101060588 ULK4P1 GOLGA8A GOLGA8B GOLGA8O SCG5 NOP10 LOC105370940 RYR3 LOC105370757
esv3569431	Chr.15:33564570 - 35080307 on Build GRCh38	Gain	AVEN SLC12A6 NUTM1 MIR1233-2 GJD2 GOLGA8A GOLGA8B MIR1233-1 LOC101928174 EMC4 ACTC1 PGBD4 LPCAT4 EMC7 NOP10 CHRM5 RYR3 KATNBL1 AQR ZNF770
nsv456789	Chr.15:33742220 - 34134417 on Build GRCh38	Gain	AVEN PGBD4 EMC7 CHRM5 RYR3
dgv4456n54	Chr.15:32604149 - 34557061 on Build GRCh38	Gain	AVEN SLC12A6 NUTM1 TMCO5B MIR1233-1 EMC4 ARHGAP11A FMN1 LOC101928042 PGBD4 LPCAT4 EMC7 LOC100131315 GOLGA8N CHRM5 GREM1 KATNBL1 MIR1233-2 LOC101928134 GOLGA8A GOLGA8B SCG5 NOP10 RYR3 LOC105370757

More Information

Additional Information:

For this assay, SNP(s) [rs76247053] are located under a primer or probe sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.

• Set Membership: Intragenic, Intronic, Non-exonic, DGV Variation

Panther Classification:

Molecular Function -

G-protein coupled receptor

Gene Ontology Categories:

Process(es)

apoptotic process
negative regulation of apoptotic process
gastric acid secretion
adenylate cyclase-inhibiting G-protein coupled acetylcholine receptor signaling pathway
phospholipase C-activating G-protein coupled acetylcholine receptor signaling pathway
G-protein coupled acetylcholine receptor signaling pathway
synaptic transmission, cholinergic
cell proliferation
dopamine transport
transmission of nerve impulse
regulation of phosphatidylinositol dephosphorylation

Function(s)

protein binding
phosphatidylinositol phospholipase C activity
G-protein coupled acetylcholine receptor activity