Hs05444140_cn

• Gene Symbol: GLIS2
• Assay Reference Genome Location: Chr.16:4327440 on build GRCh38
• Cytoband: 16p13.3

Target Gene Details

• Entrez Gene ID: 84662
• Gene Name: GLIS family zinc finger 2
• Gene Aliases: NKL, NPHP7
• Location: Chr.16:4314761-4339597 on Build GRCh38
• Assay Gene Location: Within Intron 2

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
GLIS2	NM_001318918.1			NP_001305847.1
	XM_005255641.4			XP_005255698.1
	AK126918.1

Target Gene Details

• Entrez Gene ID: 101926896
• Gene Name: GLIS2 antisense RNA 1
• Gene Aliases: -
• Location: Chr.16:4324648-4328340 on Build GRCh38
• Assay Gene Location: Within Intron 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
GLIS2-AS1	NR_110901.1
	BX104227.1

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
nsv471075	Chr.16:4317729 - 4395326 on Build GRCh38	Loss	CORO7-PAM16 PAM16 GLIS2 CORO7 GLIS2-AS1 VASN
nsv1046986	Chr.16:4049000 - 5555721 on Build GRCh38	Gain	PAM16 ADCY9 C16orf89 MGRN1 GLIS2 CORO7 ZNF500 LINC01569 NMRAL1 GLYR1 UBALD1 LOC105371063 MIR6769A GLIS2-AS1 CDIP1 SRL PPL HMOX2 EEF2KMT ALG1 ANKS3 NUDT16L1 RBFOX1 C16orf71 ROGDI NAGPA-AS1 CORO7-PAM16 NAGPA SEC14L5 DNAJA3 SEPT12 TFAP4 UBN1 C16orf96 SMIM22 VASN
nsv571282	Chr.16:4315234 - 4338138 on Build GRCh38	Gain	GLIS2 GLIS2-AS1
nsv571274	Chr.16:4309420 - 4441189 on Build GRCh38	Gain	CORO7-PAM16 PAM16 DNAJA3 GLIS2 CORO7 GLIS2-AS1 VASN
nsv527866	Chr.16:4206462 - 4412618 on Build GRCh38	Loss	CORO7-PAM16 PAM16 LOC105371063 TFAP4 GLIS2 CORO7 GLIS2-AS1 SRL LINC01569 VASN

More Information

• Set Membership: Intragenic, Intronic, Non-exonic, DGV Variation

Panther Classification:

Molecular Function -

C2H2 zinc finger transcription factor

Gene Ontology Categories:

Process(es)

negative regulation of transcription from RNA polymerase II promoter
transcription from RNA polymerase II promoter
nervous system development
cell differentiation
negative regulation of sequence-specific DNA binding transcription factor activity
negative regulation of smoothened signaling pathway
negative regulation of transcription, DNA-templated
positive regulation of transcription, DNA-templated
positive regulation of transcription from RNA polymerase II promoter

Function(s)

transcriptional activator activity, RNA polymerase II core promoter proximal region sequence-specific binding
protein binding
transcription regulatory region DNA binding
metal ion binding