accessibility menu, dialog, popup

UserName
Viewing profile as user:

Please enter the information below and press OK to send your cart to Core Services for purchase.

    

System Message

OKCancel
LOADING ...
See other SMARCB1 CNV Assays ›
Gene Symbol
SMARCB1
Assay Reference Genome
Location

Chr.22:23796677 on build GRCh38
Cytoband
22q11.23
Assay ID Hs05565862_cn
Size
Availability Made To Order
Catalog # 4400291
Price
Your Price
Online offer:
Check your price ›

Assay Details

Target Gene Details

Entrez Gene ID:

 6598

Gene Name:

 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1

Gene Aliases:

 BAF47, CSS3, INI1, MRD15, PPP1R144, RDT, RTPS1, SNF5, SNF5L1, SWNTS1, Sfh1p, Snr1, hSNFS

Location:

 Chr.22:23786931-23834518 on Build GRCh38

Assay Gene Location:

 Within Intron 3
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
SMARCB1 NM_001007468.2 NP_001007469.1
NM_001317946.1 NP_001304875.1
NM_003073.4 NP_003064.2
XM_011530345.2 XP_011528647.1
AB017523.1 BAC77068.1
AJ011737.1 CAA09758.1
AJ011738.1 CAA09759.1
AK021419.1
AK024025.1 BAB14784.1
AK299411.1
AK303620.1
AL389878.1
AU143041.1
AY207470.1 AAO59166.1
AY207471.1 AAO59167.1
AY562997.1 AAS75587.1
BC117114.1
BC143667.1
BG705851.1
CB161660.1
CR456581.1 CAG30467.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
dgv8039n54 Chr.22:23323169 - 24601506 on Build GRCh38 Gain LRRC75B LOC101929374 CABIN1 UPB1 SPECC1L-ADORA2A SPECC1L ZNF70 SLC2A11 VPREB3 ZDHHC8P1 GGT1 MIF-AS1 ADORA2A CES5AP1 IGLL1 LOC107985559 LOC388882 LOC107985555 MIF LOC100652871 DRICH1 SUSD2 CHCHD10 ADORA2A-AS1 GGT5 DDT GUSBP11 SNRPD3 GSTTP1 GSTT2 MMP11 POM121L9P GSTT2B RGL4 GUCD1 SMARCB1 PCAT14 DDTL DERL3 C22orf15
esv3893461 Chr.22:23509514 - 23995877 on Build GRCh38 Gain DDT GUSBP11 GSTT2 MMP11 ZNF70 SLC2A11 VPREB3 MIF-AS1 GSTT2B RGL4 SMARCB1 PCAT14 IGLL1 DDTL LOC107985559 MIF LOC100652871 DRICH1 DERL3 C22orf15 CHCHD10
esv2724041 Chr.22:23315914 - 24669376 on Build GRCh38 Deletion LRRC75B LOC101929374 CABIN1 UPB1 SPECC1L-ADORA2A SPECC1L ZNF70 SLC2A11 VPREB3 ZDHHC8P1 GGT1 MIF-AS1 ADORA2A CES5AP1 IGLL1 LOC107985559 LOC388882 LOC107985555 BCR MIF LOC100652871 DRICH1 SUSD2 CHCHD10 ADORA2A-AS1 GGT5 POM121L10P DDT GUSBP11 SNRPD3 GSTTP1 GSTT2 MMP11 POM121L9P GSTT2B RGL4 GUCD1 SMARCB1 PCAT14 DDTL DERL3 C22orf15 BCRP3
nsv526567 Chr.22:23348138 - 24600663 on Build GRCh38 Gain LRRC75B LOC101929374 CABIN1 UPB1 SPECC1L-ADORA2A SPECC1L ZNF70 SLC2A11 VPREB3 ZDHHC8P1 GGT1 MIF-AS1 ADORA2A CES5AP1 IGLL1 LOC107985559 LOC388882 LOC107985555 MIF LOC100652871 DRICH1 SUSD2 CHCHD10 ADORA2A-AS1 GGT5 DDT GUSBP11 SNRPD3 GSTTP1 GSTT2 MMP11 POM121L9P GSTT2B RGL4 GUCD1 SMARCB1 PCAT14 DDTL DERL3 C22orf15
nsv1062411 Chr.22:23407914 - 23922609 on Build GRCh38 Gain GUSBP11 LOC101929374 MMP11 ZNF70 SLC2A11 VPREB3 MIF-AS1 RGL4 SMARCB1 PCAT14 IGLL1 LOC388882 MIF DRICH1 DERL3 C22orf15 CHCHD10
esv3575444 Chr.22:23795497 - 24001082 on Build GRCh38 Gain DDT GSTTP1 SMARCB1 GSTT2 DDTL LOC107985559 MIF SLC2A11 LOC100652871 MIF-AS1 DERL3 GSTT2B
esv3893457 Chr.22:22657560 - 23995877 on Build GRCh38 Gain FBXW4P1 IGLV4-3 RAB36 MIR650 LOC101929374 IGLV3-19 IGLV3-21 ZNF70 SLC2A11 VPREB3 ZDHHC8P1 MIF-AS1 GNAZ RSPH14 CES5AP1 IGLL1 LOC107985559 LOC388882 LOC107985555 BCR MIF LOC100652871 DRICH1 CHCHD10 IGLV3-25 DDT GUSBP11 IGLV2-5 GSTT2 MMP11 GSTT2B RGL4 IGLL5 SMARCB1 MIR5571 IGLJ3 PCAT14 DDTL DERL3 C22orf15 IGLC1
dgv4528n100 Chr.22:23322244 - 24682765 on Build GRCh38 Gain LRRC75B LOC101929374 CABIN1 UPB1 SPECC1L-ADORA2A SPECC1L ZNF70 SLC2A11 VPREB3 ZDHHC8P1 GGT1 MIF-AS1 ADORA2A CES5AP1 IGLL1 LOC107985559 LOC388882 LOC107985555 MIF LOC100652871 DRICH1 SUSD2 CHCHD10 ADORA2A-AS1 GGT5 POM121L10P DDT GUSBP11 SNRPD3 GSTTP1 GSTT2 MMP11 POM121L9P GSTT2B RGL4 GUCD1 SMARCB1 PCAT14 DDTL DERL3 C22orf15 BCRP3
nsv1066891 Chr.22:22611045 - 24001082 on Build GRCh38 Gain FBXW4P1 IGLV4-3 RAB36 MIR650 LOC101929374 IGLV3-19 IGLV3-21 ZNF70 SLC2A11 VPREB3 ZDHHC8P1 MIF-AS1 POM121L1P GGTLC2 GNAZ RSPH14 CES5AP1 IGLL1 LOC107985559 LOC388882 LOC107985555 BCR MIF LOC100652871 DRICH1 CHCHD10 IGLV3-25 DDT GUSBP11 GSTTP1 IGLV2-5 GSTT2 MMP11 GSTT2B RGL4 IGLL5 SMARCB1 MIR5571 IGLJ3 PCAT14 DDTL DERL3 C22orf15 IGLC1
esv3575443 Chr.22:23348201 - 24670505 on Build GRCh38 Gain LRRC75B LOC101929374 CABIN1 UPB1 SPECC1L-ADORA2A SPECC1L ZNF70 SLC2A11 VPREB3 ZDHHC8P1 GGT1 MIF-AS1 ADORA2A CES5AP1 IGLL1 LOC107985559 LOC388882 LOC107985555 MIF LOC100652871 DRICH1 SUSD2 CHCHD10 ADORA2A-AS1 GGT5 POM121L10P DDT GUSBP11 SNRPD3 GSTTP1 GSTT2 MMP11 POM121L9P GSTT2B RGL4 GUCD1 SMARCB1 PCAT14 DDTL DERL3 C22orf15 BCRP3

Back To Top

More Information


Additional Information:

For this assay, SNP(s) [rs79277445] are located under a primer or probe sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.

Set Membership:

 Intragenic Intronic Non-exonic DGV Variation

Panther Classification:

Gene Ontology Categories:

Function(s) Process(es)


Back To Top

Related Products