accessibility menu, dialog, popup

UserName
Viewing profile as user:

Please enter the information below and press OK to send your cart to Core Services for purchase.

    

System Message

OKCancel
LOADING ...
See other SMARCB1 CNV Assays ›
Gene Symbol
SMARCB1
Assay Reference Genome
Location

Chr.22:23798036 on build GRCh38
Cytoband
22q11.23
Assay ID Hs05568540_cn
Size
Availability Made To Order
Catalog # 4400291
Price
Your Price
Online offer:
Check your price ›

Assay Details

Target Gene Details

Entrez Gene ID:

 6598

Gene Name:

 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1

Gene Aliases:

 BAF47, CSS3, INI1, MRD15, PPP1R144, RDT, RTPS1, SNF5, SNF5L1, SWNTS1, Sfh1p, Snr1, hSNFS

Location:

 Chr.22:23786931-23834518 on Build GRCh38

Assay Gene Location:

 Within Intron 3
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
SMARCB1 NM_001007468.2 NP_001007469.1
NM_001317946.1 NP_001304875.1
NM_003073.4 NP_003064.2
XM_011530345.2 XP_011528647.1
AB017523.1 BAC77068.1
AJ011737.1 CAA09758.1
AJ011738.1 CAA09759.1
AK021419.1
AK024025.1 BAB14784.1
AK299411.1
AK303620.1
AL389878.1
AU143041.1
AY207470.1 AAO59166.1
AY207471.1 AAO59167.1
AY562997.1 AAS75587.1
BC117114.1
BC143667.1
BG705851.1
CB161660.1
CR456581.1 CAG30467.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
dgv8039n54 Chr.22:23323169 - 24601506 on Build GRCh38 Gain GSTTP1 ZDHHC8P1 CHCHD10 LOC388882 MIF ZNF70 GSTT2 IGLL1 SPECC1L-ADORA2A LOC100652871 LOC101929374 GUCD1 ADORA2A-AS1 POM121L9P MIF-AS1 GGT1 SMARCB1 LOC107985559 GGT5 CABIN1 DRICH1 GUSBP11 ADORA2A LRRC75B C22orf15 MMP11 UPB1 SUSD2 LOC107985555 DERL3 RGL4 SNRPD3 SPECC1L CES5AP1 DDT PCAT14 DDTL VPREB3 SLC2A11 GSTT2B
esv3893461 Chr.22:23509514 - 23995877 on Build GRCh38 Gain SMARCB1 LOC107985559 DRICH1 CHCHD10 GUSBP11 MIF ZNF70 C22orf15 GSTT2 MMP11 IGLL1 DERL3 RGL4 LOC100652871 DDT PCAT14 MIF-AS1 DDTL VPREB3 SLC2A11 GSTT2B
esv2724041 Chr.22:23315914 - 24669376 on Build GRCh38 Deletion GSTTP1 ZDHHC8P1 CHCHD10 LOC388882 MIF ZNF70 GSTT2 IGLL1 SPECC1L-ADORA2A LOC100652871 LOC101929374 GUCD1 ADORA2A-AS1 POM121L9P MIF-AS1 GGT1 SMARCB1 LOC107985559 GGT5 CABIN1 DRICH1 GUSBP11 ADORA2A LRRC75B C22orf15 MMP11 BCR UPB1 SUSD2 LOC107985555 DERL3 RGL4 SNRPD3 SPECC1L CES5AP1 DDT BCRP3 PCAT14 DDTL VPREB3 SLC2A11 POM121L10P GSTT2B
nsv526567 Chr.22:23348138 - 24600663 on Build GRCh38 Gain GSTTP1 ZDHHC8P1 CHCHD10 LOC388882 MIF ZNF70 GSTT2 IGLL1 SPECC1L-ADORA2A LOC100652871 LOC101929374 GUCD1 ADORA2A-AS1 POM121L9P MIF-AS1 GGT1 SMARCB1 LOC107985559 GGT5 CABIN1 DRICH1 GUSBP11 ADORA2A LRRC75B C22orf15 MMP11 UPB1 SUSD2 LOC107985555 DERL3 RGL4 SNRPD3 SPECC1L CES5AP1 DDT PCAT14 DDTL VPREB3 SLC2A11 GSTT2B
nsv1062411 Chr.22:23407914 - 23922609 on Build GRCh38 Gain SMARCB1 DRICH1 CHCHD10 LOC388882 GUSBP11 MIF ZNF70 C22orf15 MMP11 IGLL1 DERL3 RGL4 LOC101929374 PCAT14 MIF-AS1 VPREB3 SLC2A11
esv3575444 Chr.22:23795497 - 24001082 on Build GRCh38 Gain SMARCB1 LOC107985559 GSTTP1 DERL3 LOC100652871 MIF DDT GSTT2 MIF-AS1 DDTL SLC2A11 GSTT2B
esv3893457 Chr.22:22657560 - 23995877 on Build GRCh38 Gain ZDHHC8P1 FBXW4P1 CHCHD10 LOC388882 MIF ZNF70 GSTT2 IGLV3-25 IGLL1 IGLV4-3 IGLL5 LOC100652871 GNAZ LOC101929374 MIR5571 IGLV3-21 MIF-AS1 IGLC1 RAB36 SMARCB1 LOC107985559 DRICH1 GUSBP11 MIR650 C22orf15 IGLV3-19 IGLJ3 MMP11 BCR LOC107985555 DERL3 IGLV2-5 RGL4 CES5AP1 DDT RSPH14 PCAT14 DDTL VPREB3 SLC2A11 GSTT2B
dgv4528n100 Chr.22:23322244 - 24682765 on Build GRCh38 Gain GSTTP1 ZDHHC8P1 CHCHD10 LOC388882 MIF ZNF70 GSTT2 IGLL1 SPECC1L-ADORA2A LOC100652871 LOC101929374 GUCD1 ADORA2A-AS1 POM121L9P MIF-AS1 GGT1 SMARCB1 LOC107985559 GGT5 CABIN1 DRICH1 GUSBP11 ADORA2A LRRC75B C22orf15 MMP11 UPB1 SUSD2 LOC107985555 DERL3 RGL4 SNRPD3 SPECC1L CES5AP1 DDT BCRP3 PCAT14 DDTL VPREB3 SLC2A11 POM121L10P GSTT2B
nsv1066891 Chr.22:22611045 - 24001082 on Build GRCh38 Gain GSTTP1 ZDHHC8P1 FBXW4P1 CHCHD10 LOC388882 MIF ZNF70 GSTT2 IGLV3-25 IGLL1 IGLV4-3 IGLL5 LOC100652871 GNAZ LOC101929374 MIR5571 IGLV3-21 MIF-AS1 IGLC1 RAB36 SMARCB1 LOC107985559 DRICH1 GUSBP11 MIR650 C22orf15 IGLV3-19 GGTLC2 IGLJ3 MMP11 POM121L1P BCR LOC107985555 DERL3 IGLV2-5 RGL4 CES5AP1 DDT RSPH14 PCAT14 DDTL VPREB3 SLC2A11 GSTT2B
esv3575443 Chr.22:23348201 - 24670505 on Build GRCh38 Gain GSTTP1 ZDHHC8P1 CHCHD10 LOC388882 MIF ZNF70 GSTT2 IGLL1 SPECC1L-ADORA2A LOC100652871 LOC101929374 GUCD1 ADORA2A-AS1 POM121L9P MIF-AS1 GGT1 SMARCB1 LOC107985559 GGT5 CABIN1 DRICH1 GUSBP11 ADORA2A LRRC75B C22orf15 MMP11 UPB1 SUSD2 LOC107985555 DERL3 RGL4 SNRPD3 SPECC1L CES5AP1 DDT BCRP3 PCAT14 DDTL VPREB3 SLC2A11 POM121L10P GSTT2B

Back To Top

More Information


Additional Information:

For this assay, SNP(s) [rs200906093] are located under a primer or probe sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.

Set Membership:

 Intragenic Intronic Non-exonic DGV Variation

Panther Classification:

Gene Ontology Categories:

Function(s) Process(es)


Back To Top

Related Products